CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAAATTTCCTGGATATTAGCCCTTTATCATATGTGGAGTTGGTT
AAAGAGGAAAAAAAAATCTCTTCACATTCTGTAGGCTGCCACTTTGCCTT
AACAAGTATGTCTTTTGCATGCAAAGCTTTTTCTGTTTCATGAGGTCACA
TTTATTAATTGTTGATCTTAGAACCTGCATTAGCAGTGTTCTGTTCAGAA
AGTTTTTTTTCTGTGCCAATGTGTTCAAGACTATTCCCCACTTTATCTTC
TGTTTTTATCTTATAGCTTTGAAGTATAACTTCAATCAGGAACGGTGAGA
CCTTCCGCAGTCCTTTTATTGTTCAGGATTGTTTTAGCAGTCGTGTGTTT
TTTCTCTTTTTCCATATGAAGCTGAGACTTGTCTGTGCAGAATTGTGTTG
GAGTTTTGATAAGAATTGCCTTGAATCTGTAGATTTGCTTTTCATAGTGT
AACCATCTTTACTATATTAATCCTACCAATCCATGAGCATGGGAGAGGGA
GATCCTTCTATCTTTTCATATCTTTCATTTCTTTCTGCAAAGACTTGAAC
TTTCTGTCACACAAGTCTTTCACTTTCTCAGTTAGAGTTACACAACTATA
TTTCATATTATTTGGGACTATTATGAAAGGTGTCATTTTCTTGATTTCTT
TCTCAGTCCCTTTGTCATTTGTATTGG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATCTTTACAGGAGCATCCCAACAGCC
AGTGCCATATTTGTTCTCTTCACCTAGTCACGTCTGGACTGTTAGACAGA
GTGGAAGCGCGCTATGCAGGTCCTTTTCGCAGGCAAAACTCACCTAAAGG
TCAGTCCAATTCTATCTCAGAAACGAGGAAATAAAGGGCCAAGAGGGCTA
AACAAGCTCTTTGAAGACACAGAAACCTATACAATTCTGCAAACTATGAA
GGATTTGCTTTCTTTAAACACCTTTGGAGATTCTTTTATTCTAATCTCAT
TAAACCCCTTTCTTATTCATGGTTTGTAAAACTAAGTACACGAATTCACT
ACAGTTCAAACCATGGATTTTAAAAAAGTAATCTACCTAACTGTTCCATA
CACAAAGCAGTAACTGTCTGGTCAACTTCCTGCCGAGAAGTAGACCACCT
CTCTAACTACCAGGCTTAAAGACAGAAACTTCATGCAAGCCTCAAAGAAA
TCACACTCCACATCCAAGAATCTGAAATTTCAAACTAAGAAAAATGTAGC
AGTGATAAAAATAATAGGGCTAGTGAAATAGCTAAGGGGTGAAGGTGGTT
GCTGCTAAGCCTAACGATCTTGAGTTCAACTCCCAGAAGTCACACAGCCT
CAAAAAGTGTCCTCTGACATCCN

Query= MSMg01no301_f02.g1 MSMg01no301_f02.g1 CHROMAT_FILE:
MSMg01no301_f02.g1 PHD_FILE: MSMg01no301_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:42 2005
         (650 letters)



>mm_chr2_49311619_49312669
          Length = 1051

 Score = 1149 bits (594), Expect = 0.0
 Identities = 636/650 (97%), Gaps = 1/650 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatctttacaggagcatcccaacagccagtgccatatttgttctcttcacctagtcacgt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 850 aatctttacaggagcatcccaacagccagtgccatatttgttctcgtcacctagtcacgt 791

                                                                       
Query: 61  ctggactgttagacagagtggaagcgcgctatgcaggtccttttcgcaggcaaaactcac 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 790 ctggactgttagacagagtggaagtgcgctatgcaggtccttttcgcaggcaaaactcac 731

                                                                       
Query: 121 ctaaaggtcagtccaattctatctcagaaacgaggaaataaagggccaagagggctaaac 180
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 730 ctaaaggtcagtccaattctatctcagaaacgaggaaatgaaggaccaagagggctaaac 671

                                                                       
Query: 181 aagctctttgaagacacagaaacctatacaattctgcaaactatgaaggatttgctttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aagctctttgaagacacagaaacctatacaattctgcaaactatgaaggatttgctttct 611

                                                                       
Query: 241 ttaaacacctttggagattcttttattctaatctcattaaacccctttcttattcatggt 300
           |||||||| |||||| |||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 610 ttaaacacttttggacattcttttattctaatctcattaaacccctttcaaattcatggt 551

                                                                       
Query: 301 ttgtaaaactaagtacacgaattcactacagttcaaaccatggattttaaaaaagt-aat 359
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||
Sbjct: 550 ttgtaaaactaagtacacaaattcactacagttcaaaccatggattttaaaaaagtgtat 491

                                                                       
Query: 360 ctacctaactgttccatacacaaagcagtaactgtctggtcaacttcctgccgagaagta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctacctaactgttccatacacaaagcagtaactgtctggtcaacttcctgccgagaagta 431

                                                                       
Query: 420 gaccacctctctaactaccaggcttaaagacagaaacttcatgcaagcctcaaagaaatc 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 430 gaccacctctctaactaccaggcttaaagacagaaacttcatgcaagcctcacagaaatc 371

                                                                       
Query: 480 acactccacatccaagaatctgaaatttcaaactaagaaaaatgtagcagtgataaaaat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 acactccacatccaagaatctgaaatttcaaactaagaaaaatgtagcagtgataaaaat 311

                                                                       
Query: 540 aatagggctagtgaaatagctaaggggtgaaggtggttgctgctaagcctaacgatcttg 599
           | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agtagggctagtgaaataactaaggggtgaaggtggttgctgctaagcctaacgatcttg 251

                                                             
Query: 600 agttcaactcccagaagtcacacagcctcaaaaagtgtcctctgacatcc 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agttcaactcccagaagtcacacagcctcaaaaagtgtcctctgacatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1051
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1041
Effective search space:   666240
Effective search space used:   666240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)