BAC Information

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BAC

Clone NameMSMg01-301J07
Chromosome2 (Build37)
Map Location 47,633,620 - 47,633,943
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301J07.T7 (MSMg01no301_j07.b1)MSMg01-301J07.TJ (MSMg01no301_j07.g1)
ACCAG427736AG427737
length774775
length of high quality
(start - end)
328 (38 - 365)646 (67 - 712)
definitionCHROMAT_FILE: MSMg01no301_j07.b1 PHD_FILE: MSMg01no301_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:00 2005CHROMAT_FILE: MSMg01no301_j07.g1 PHD_FILE: MSMg01no301_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAT
TCATTTCATACAGCTGAGCAAAATTTCATTGTGTAAAGAGAATTGTTTAT
ACATACTATGGACACTAAGTAAGAAAAAGATGTCAGTGGGGAAACATATC
TGGGAAAAATTTGCTCTGAGAGCAGAGCAAAATCTAAAGACAAAATTTGA
ATAACTTTTCCAAGTTAGTAACATATAAGTTTCTCATCATTTGGGGAAAT
GACATATTTAGTGTTGGGATAATAAATCTGGAAGATTCATCAGGTTAGCC
CACTAAGACCAAGGACCTTTGGAGTGTTCCAAGTATGGAGAAATAAGGTT
GTAAAATAAAAACAGTTCTGTGCACCCTTTCTGACAATTTACCTAACGGA
ATAGCAAAGGTTTCCAGTTATTTATTGTGATTTGCTTCGTTCAAAAATAT
TCATTTTTATGCATTTTCTGCATCCATAACTTTGTGTTCTTCCTTAAAGT
GTTCTCCAGTTGATATAAATCAGATTTCACAAGGCTAGGTTCACCCTTGT
TTGGCAGGCAATCATTCAGTCTGCCCTGTGAAGCTTATTTCATGTAGTTC
CCTCTGATCACATGGATCAACTTGACTCATAGTTGGTAGTAGTGGGGCCA
AGAACAAAGCTTAGACCTCTTTATTCCAGCTCTGCAACTCTGTTACACAG
CAAATTTTTCATAGGAATCACTTTCAAGTATTCTTCAATTGGCTCATCCC
ACTCATCCAGATCTGATCTAATAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACATAAAACCAGAGACACTGAAACTTATAGAGG
AGAAAGTAGAGAAAAGCCTTGAAGATATGGGTACAGGGGAAAAATTCCTG
AATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGATAAATGGGA
CCTCATAAAATTGCAAAGCTTCTGCAAGGCAAAGGACACCGTCAATAAGA
CAAAAAGGCCACCAACATATTGGGAAAGGATCTTTACCTATCCCAAATCA
GATAGGGGACTAATATCCAATATATATATATAAAGAACTCAAGAAGGTGG
ACTCCAGAAAATCAAATAAACCCATTAAAAAATGGGGCTCAGAGCTGAAC
AAAGAATTCTCATCTGAGGAATACCGAATGGCTGAAAAGCACCTGAGAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGTATGCAAGCTTGTACAACCACTCTGGAAATCAGCCTGGCGGTTCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCTGCAATACCACTCCTG
GGCATATATCCAGAAGATGTCCCAACCAGAAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_j07.b1 MSMg01no301_j07.b1 CHROMAT_FILE:
MSMg01no301_j07.b1 PHD_FILE: MSMg01no301_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:00 2005
         (328 letters)



>mm_chr2_47633416_47634143
          Length = 728

 Score =  611 bits (316), Expect = e-179
 Identities = 322/324 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattcatttcatacagctgagcaaaatttcattgtgtaaagagaattgtttata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaattccattcatttcatacagctgagcaaaatttcattgtgtaaagagaattgtttata 469

                                                                       
Query: 65  catactatggacactaagtaagaaaaagatgtcagtggggaaacatatctgggaaaaatt 124
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 468 catactatggacactaagtaagaaaaagatgtcagtggggaaacatgtctgggaaaaatt 409

                                                                       
Query: 125 tgctctgagagcagagcaaaatctaaagacaaaatttgaataacttttccaagttagtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgctctgagagcagagcaaaatctaaagacaaaatttgaataacttttccaagttagtaa 349

                                                                       
Query: 185 catataagtttctcatcatttggggaaatgacatatttagtgttgggataataaatctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 catataagtttctcatcatttggggaaatgacatatttagtgttgggataataaatctgg 289

                                                                       
Query: 245 aagattcatcaggttagcccactaagaccaaggacctttggagtgttccaagtatggaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 288 aagattcatcaggttagcccactaagaccaaggacctttggagtgttccaagtgtggaga 229

                                   
Query: 305 aataaggttgtaaaataaaaacag 328
           ||||||||||||||||||||||||
Sbjct: 228 aataaggttgtaaaataaaaacag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)