BAC Information

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BAC

Clone NameMSMg01-301L15
Chromosome2 (Build37)
Map Location 134,073,511 - 134,073,982
singlet/doubletsinglet
Overlap genenone
Upstream geneA430048G15Rik, Bmp2
Downstream geneHao1, Txndc13, LOC627897, LOC433478, Plcb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301L15.T7 (MSMg01no301_l15.b1)MSMg01-301L15.TJ (MSMg01no301_l15.g1)
ACCAG427837
length755760
length of high quality
(start - end)
---471 (72 - 542)
definitionCHROMAT_FILE: MSMg01no301_l15.b1 PHD_FILE: MSMg01no301_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:11 2005CHROMAT_FILE: MSMg01no301_l15.g1 PHD_FILE: MSMg01no301_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CCAGC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCCTCTTCTTGTTTCCTTGTGGGAAGGG
AAAGTGGGGAGTTTTCTGTGCCGCAACATAGTTAAGCAGGCACGGGTTTG
TTTGGAATAACGGAATTTATTCAGCTTCCATTAAGAATATCTAATTATAA
ATAATTACACTAAACTGATTTAATTTCATCTTCTTGAGCTTTATTATAGC
AACAAGCTCAACCACATGCATTTTGTTAAATAGACCATTGCACTGTAAAG
GGGGGGGTAAAAACACTTAACAAGATTGATCTGACTTGCATGGGAAAGGA
GGGATTAACAATAATTGAGCATGTTCTGCTGTATCATTTCCCATTCCATT
AGAGCTGAAACATAACCACGTGTTTCAAAAAATGAGTTCACAGTAAAGAA
TTAGCTTGGTTTTAATAGATGCCCCTGCCCTAGTGAGGAGTTAATGCCAG
AAATAGGCAAACAATTTGTTTTAGTATTGAGCTAAATTTTAAATACGTAA
GAAATCAAATTATTAAGGCTAACTGCTGACGAGTGGTTGACATAATACAA
ATTGATATTATTTTTTCTCAGCTGCCCATAAATGCTTAAAGATATAGAAC
CCTTTCCTTCTGAATATGATTAATGAGCTCTGCGTATTAAACGGTTTATT
CTTGAAACATTTATTCCCCCTCATCTGTAAAACCTTAAGAGGCATTATTT
TTTTTCTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_l15.g1 MSMg01no301_l15.g1 CHROMAT_FILE:
MSMg01no301_l15.g1 PHD_FILE: MSMg01no301_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:11 2005
         (471 letters)



>mm_chr2_134073311_134074184
          Length = 874

 Score =  843 bits (436), Expect = 0.0
 Identities = 462/472 (97%), Gaps = 3/472 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctcttcttgtttccttgtgggaagggaaagtggggagttttctgtgccgcaacatag 60
           ||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||
Sbjct: 672 tgcctcttcttgtttccttgtgggaagggaaagtggggagttttcagtggagcaacatag 613

                                                                       
Query: 61  ttaagcaggcacgggtttgtttggaataacggaatttattcagcttccattaagaatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttaagcaggcacgggtttgtttggaataacggaatttattcagcttccattaagaatatc 553

                                                                       
Query: 121 taattataaataattacactaaactgatttaatttcatcttcttgagctttattatagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 taattataaataattacactaaactgatttaatttcatcttcttgagctttattatagca 493

                                                                       
Query: 181 acaagctcaaccacatgcattttgttaaatagaccattgcactgtaaaggg---gggggt 237
           ||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||
Sbjct: 492 acaagctcaaccacatgcattttgttaaatagaccattgcactgtgaagggggcgggggt 433

                                                                       
Query: 238 aaaaacacttaacaagattgatctgacttgcatgggaaaggagggattaacaataattga 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaaaacacttaacaagattgatctgacttgcatgggaaaggagggattaacaataattga 373

                                                                       
Query: 298 gcatgttctgctgtatcatttcccattccattagagctgaaacataaccacgtgtttcaa 357
           |||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||
Sbjct: 372 gcatgttctgctgtatcatttcccattccattagagctgaaacataagtaggtgtttcaa 313

                                                                       
Query: 358 aaaatgagttcacagtaaagaattagcttggttttaatagatgcccctgccctagtgagg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aaaatgagttcacagtaaagaattagcttggttttaatagatgcccctgccctagtgagg 253

                                                               
Query: 418 agttaatgccagaaataggcaaacaatttgttttagtattgagctaaatttt 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agttaatgccagaaataggcaaacaatttgttttagtattgagctaaatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 874
Length adjustment: 10
Effective length of query: 461
Effective length of database: 864
Effective search space:   398304
Effective search space used:   398304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)