BAC Information

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BAC

Clone NameMSMg01-302K23
Chromosome2 (Build37)
Map Location 110,473,888 - 110,474,181
singlet/doubletsinglet
Overlap geneSlc5a12
Upstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799
Downstream geneMuc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302K23.T7 (MSMg01no302_k23.b1)MSMg01-302K23.TJ (MSMg01no302_k23.g1)
ACCAG428505AG428506
length756752
length of high quality
(start - end)
323 (36 - 358)297 (66 - 362)
definitionCHROMAT_FILE: MSMg01no302_k23.b1 PHD_FILE: MSMg01no302_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:23 2005CHROMAT_FILE: MSMg01no302_k23.g1 PHD_FILE: MSMg01no302_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGAGGAATACTGAATGGCACAGAAGCACCTGAAAAAATGTTCAACATCCT
TAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA
CCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG
AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGAC
TTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGAC
ATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGA
AGATGTCCCTTTTTTTAACACCCCACACCCGCTCCACTATGTTCATAGCA
GCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAAC
AGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACT
CAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGAAGGAC
CTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACA
CAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATACCC
AAGATATAAGATACAATTTGCTAAACACCATGAAAATCAAGAAGAATGAA
GACTGAAGTGTGGACACTATGCCCCTCCTTAGAATTGGGAACAAACACCC
ATGGAN
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGCTGAAAATTTACATCTTTAGCTAATTCAGATCT
GCCAGAGTGAATATCAGAATATGAGACATAAGAAATGGGCAGAAGATTAA
AAACTAGAAGAGCAAAGAGGTGCAAATCAGCTGTCTTACAGGAAGCTCTC
TGAGGCCCTCATTACTGACAAAGCCTTCCTGCTCTCCTCTGATCCCACCC
CACATCCTCCAGCACACTATTGCAAGATAAACAGCTTTCATAGCCATTGG
GTTTCTCACAGCCTTCAGAATACTAAGATATGTTTCATCACATGTATTAA
GAGAATACCTTTTGTTTGGCCCGCCCCCCCTGAGACCTGACTGTGGTAAT
CGTCTCCCTTGGAACAGTTCACAGATAGAAACTTTTCAAGACGCGTTTTG
TAAATTCCTACACTAAAACAGTAACACAGGACTTGAATACCAAACTTAAA
TATATGAAACACTAAACAAAAACATTAATTAAGAGAAGTTATTTAGCTTT
TATATAACACTGAAAGTTATGGTTACCAGCATCACCTACAATTATATGAC
ATGTGTATAAAGATGGGCTTTGTGAAGAGAAAAGTAGACTCAGTGCAATC
ATGCAGACATGTGGTACTTGAGCTTCTGTTGGTTTACATATGGAAAACGA
GAATCTGCATATTGATTTACTATATGCAAATAGTGAAGAGGTAGAGTAAA
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_k23.g1 MSMg01no302_k23.g1 CHROMAT_FILE:
MSMg01no302_k23.g1 PHD_FILE: MSMg01no302_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:23 2005
         (297 letters)



>mm_chr2_110473688_110474384
          Length = 697

 Score =  530 bits (274), Expect = e-155
 Identities = 289/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctgaaaatttacatctttagctaattcagatctgccagagtgaatatcagaatatgag 60
           ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 494 agctgaaaatttacatctttagctaattcagatctgctagagtgactatcagaatatgag 435

                                                                       
Query: 61  acataagaaatgggcagaagattaaaaactagaagagcaaagaggtgcaaatcagctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 434 acataagaaatgggcagaagattaaaaactagaagagcaaagaggtgcaaatcagatgtc 375

                                                                       
Query: 121 ttacaggaagctctctgaggccctcattactgacaaagccttcctgctctcctctgatcc 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcacaggaagctctctgaggccctcattactgacaaagccttcctgctctcctctgatcc 315

                                                                       
Query: 181 caccccacatcctccagcacactattgcaagataaacagctttcatagccattgggtttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 caccccacatcctccagcacactattgcaagataaacagctttcatagccattgggtttc 255

                                                                 
Query: 241 tcacagccttcagaatactaagatatgtttcatcacatgtattaagagaatacc 294
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 254 tcacagccttcagaatactaagatatgtttcgtcacatgtattaagagaatacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)