BAC Information

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BAC

Clone NameMSMg01-303C06
Chromosome2 (Build37)
Map Location 142,835,997 - 142,989,988
singlet/doubletdoublet
Overlap geneSnrpb2, Otor, LOC668915
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303C06.T7 (MSMg01no303_c06.b1)MSMg01-303C06.TJ (MSMg01no303_c06.g1)
ACCAG428817AG428818
length784728
length of high quality
(start - end)
299 (73 - 371)246 (122 - 367)
definitionCHROMAT_FILE: MSMg01no303_c06.b1 PHD_FILE: MSMg01no303_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:58 2005CHROMAT_FILE: MSMg01no303_c06.g1 PHD_FILE: MSMg01no303_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,989,690 - 142,989,988)(142,835,997 - 142,836,241)
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACATGGATATTCAGTCATAGGTCAGGCAGCTAGTTAGAGCAAGC
AAGCCAGAATATACTCTTCAGGAAAAAACGAAGATGGGGCTGAGCAGCAA
AGTCAAGTTCTAGCACATGAAGCTTGCAGACAGCTCTCCTCTCTCTGTTG
CTACTCCCTGTGTTTACCCCTAGAATTTGAATACCCTAGATAAGAATGTG
TTCTTCTTAGAAGTCCATTTTACCCAGAATTTAGTATGTTTCATGTAGAT
GTAAAAGATGCAAGAGGAAAGAACACATAGTTGGCTGGGTAGAGAGGTGG
GAAGGATCTTGGAGGAGTTGGGTAGGCTAACATACCCTCTCTTTATACCC
ATTGAATAATTCTATTTCTCCCCCCTTCTACTCATTGTCCATATTATTCC
CTTCCCTCCCTCCCTCCTATTAACCACCGACCTATTCCCAATTCACTCTA
CACCTTCCCAACTCCTCTTTCATTTTCCATTTTCCCATTTTCCCTCCTTC
CCTTTTTCCCATCCCATCCCCTCCCTCCTTTCTTTTATCCCTATTTTCCC
TTTTCATTCCATTTTCCTCTCCCCTTTTATTTTTCTTACTTCCTTCCTTT
TTTTTTATCCCGCTTTTAGCTGCCCCACAACATTTCTTTATTCCTTACCA
TATCCTATCCTATTCTTCCTCATTTCCTTTCCTTTCCTATGCTTTTCTAT
TCCTTCCTCTCCTTCCTTTGCCTTTTCTTTTGCC
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATGGTTTTCAAATTGGTTTTCTCCAT
ACTGCCAGTCTCATATATTTCCCCCAATAATCCCATGGAGTAGACAAACA
AGTTAATACTGTAATATCCTTTTTAGATATATGTAATACATTATTTGGGA
ATAAATGATTAGAGGTATGGAAAATAGAAATCAAATTCCAGGCAAATATA
TGACATCATATACCCTGTTGAGAACTTATCTCTTAATAAAAATTTGAACC
AATACTTGAAAATTCCACGAACATTGAAGCAAACCTTAATGTCTCTTGCC
TTAGAATTATTTGTCTTTTTAACTAACATCTCTATAGCACTTGCTTTTAG
TGTTATATCTGCTCACCCCCCAGGAAGTTTGAGTTACATTTACTAACTGC
ATTCTTTCATGACTCTGTCAGCTTAATGCATAGATTTCTTTTTTGACGCA
ATTAAATCATAAGTTTCTTATGAACTTTTCTTTCCTTGGTACTTTCTTCA
GTGCCCAGAAGAAAGGTTTCTCTAACAGAAGATGTCTAACGCTCTAACCA
GGACAATCCCAGAAAAACTGCTATAATTGGTTACCTAGTACCCAGCACAT
GGTTGCTTCATGGATTGAACTAAATTGGACATCAAAGTACTAAAGATATT
ACTTCCCTCACAGTCCTTGCTACTGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_c06.b1 MSMg01no303_c06.b1 CHROMAT_FILE:
MSMg01no303_c06.b1 PHD_FILE: MSMg01no303_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:58 2005
         (299 letters)



>mm_chr2_142989490_142990188
          Length = 699

 Score =  571 bits (295), Expect = e-167
 Identities = 298/299 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataggtcaggcagctagttagagcaagcaagccagaatatactcttcaggaaaaaacgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ataggtcaggcagctagttagagcaagcaagccagaatatactcttcaggaaaaaacgaa 440

                                                                       
Query: 61  gatggggctgagcagcaaagtcaagttctagcacatgaagcttgcagacagctctcctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gatggggctgagcagcaaagtcaagttctagcacatgaagcttgcagacagctctcctct 380

                                                                       
Query: 121 ctctgttgctactccctgtgtttacccctagaatttgaataccctagataagaatgtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctctgttgctactccctgtgtttacccctagaatttgaataccctagataagaatgtgtt 320

                                                                       
Query: 181 cttcttagaagtccattttacccagaatttagtatgtttcatgtagatgtaaaagatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cttcttagaagtccattttacccagaatttagtatgtttcatgtagatgtaaaagatgca 260

                                                                      
Query: 241 agaggaaagaacacatagttggctgggtagagaggtgggaaggatcttggaggagttgg 299
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agaggaaagaacacaaagttggctgggtagagaggtgggaaggatcttggaggagttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no303_c06.g1 MSMg01no303_c06.g1 CHROMAT_FILE:
MSMg01no303_c06.g1 PHD_FILE: MSMg01no303_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:58 2005
         (246 letters)



>mm_chr2_142835796_142836441
          Length = 646

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   cccaataatcccatggagtagacaaacaagttaatactgtaatatcctttttagatatat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cccaataatcccatggagtagacaaacaagttaatactgtaatatcctttttagatatat 261

                                                                       
Query: 62  gtaatacattatttgggaataaatgattagaggtatggaaaatagaaatcaaattccagg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtaatacattatttgggaataaatgattagaggtatggaaaatagaaatcaaattccagg 321

                                                                       
Query: 122 caaatatatgacatcatataccctgttgagaacttatctcttaataaaaatttgaaccaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caaatatatgacatcatataccctgttgagaacttatctcttaataaaaatttgaaccaa 381

                                                                       
Query: 182 tacttgaaaattccacgaacattgaagcaaaccttaatgtctcttgccttagaattattt 241
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tacttgaaaattccacaaacattgaagcaaaccttaatgtctcttgccttagaattattt 441

                
Query: 242 gtctt 246
           |||||
Sbjct: 442 gtctt 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)