BAC Information

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BAC

Clone NameMSMg01-303E05
Chromosome2 (Build37)
Map Location 152,962,604 - 152,963,201
singlet/doubletsinglet
Overlap geneHck
Upstream geneTcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535
Downstream geneTm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303E05.T7 (MSMg01no303_e05.b1)MSMg01-303E05.TJ (MSMg01no303_e05.g1)
ACCAG428905AG428906
length763750
length of high quality
(start - end)
228 (45 - 272)592 (74 - 665)
definitionCHROMAT_FILE: MSMg01no303_e05.b1 PHD_FILE: MSMg01no303_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:08 2005CHROMAT_FILE: MSMg01no303_e05.g1 PHD_FILE: MSMg01no303_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCAGAAAGTTGAGGCAGGAACCTGAAGGCAGGCCTGCTTGCTC
TTCCACGCATTTGAGGACAATGGGAACCATGGAGAAACGCTGCTGACCAG
CTAGCTCACTCACTGGTTCATATTTGGCTAGTTTTTTTTTTTCTATCTTT
TTTTTTGGGGGGGGTTGGTTTTATGAGACAGGGTTTCTCTGAGCAGCCCT
GGATGTCCTGGATCTCACTTTTTAAACCAGGCTGATCTTGAACTCAGAAA
ACTGCCTGCCTCCGTTTTTTTAATGATGGGATTAAAGGCATGGGCCACGA
CNCTTTTTTTTTTTACCCCCCGCAGCCCCCCAAANAGGGAAGAGGGGGAN
GAAAGAGGGGGCCCCCCAAAAAAAAAAAAAAAAANCGGGGGGGCGGGTAA
CCCACTTGCCCATAAGCCACTCTGCATTAGACCCGAATCCATTAAGGATT
TCCCACGAAATGACCTCTCGTACACTACTACACTGTCCTGGCATAAGGAC
CCCGGAGGGAGGAAGAATTTTACGGAGAAAAAATAATGCTCTAGGCTTGC
TCTGAAACAATCCGTTTACTCATCAACACCATAATAAATTACCCACAGAA
AAATAACCCTATAAACAGCTGTTCGAAATCCCGCACCAAGCAACCTTATG
TTAAATTCTATGTCACCGAATTTGCAATCACTACGCGCTCTTGTTTATCT
ACTCATTTGAAAG
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGGCCAAAGGTGCGTGGGCAGGGTTA
GAGTGTGGGCCAAGCTGACTCCTTTCAGTCTCCAAGATGGCCTTGGCATG
GCTCTTCTGGCACATCCACCTCATAGAGCACCTACACTCCAGCCTCCTAG
CTGGCAGAGTGCAATCCTGTGAAGGGAGCTCGGTGGAGAGGAGGGGCAGA
GGCTGCAGAGCCTCTGGGCGACAGAGGAATCACATGGCTTCCTTGTGACT
CATACCTGGGAACCTCAGTGCTGGGCTGTAAAGAAGTCTTGCTCCAAATT
CTAAGGGACAAGAAGCCACATGGAGAAAGACCATAAAGGTGCCACTTCAT
CTTGAATGTTCCACCTGTGTCACCTCACTTCACAGTGTGGTTGGTCCTGC
TATGACCAACACACAGAATCATGACAACGTCCATGTTGTCACTTCAGGCT
ACTTAGCTTTGGGCCAATGTACCCTGGGATTATTCAGCATATTTCAGGAA
TGTTTGAGAAAGGATTCCACTCTGTAGCCCAGGTTGTCCTGGCACTCATT
ATGTAGCCCAGGCTAGCCTCAATCTTGTAGCTGTCCTGCCTCTCAAGTGC
TGGGATTACAGATGTGTGTCTCCACACATGGCTTCTCAGAGTTAGTTAGT
TAGTTAGTTAACTAGGTAGCTAGCTAGTTTATTACCTCCTCTTCTACCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_e05.g1 MSMg01no303_e05.g1 CHROMAT_FILE:
MSMg01no303_e05.g1 PHD_FILE: MSMg01no303_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:08 2005
         (592 letters)



>mm_chr2_152962404_152963395
          Length = 992

 Score = 1013 bits (524), Expect = 0.0
 Identities = 577/598 (96%), Gaps = 6/598 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggccaaaggtgcgtgggcagggttagagtgtgggccaagctgactcctttcagtctcc 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 atggccaaaggtgcgtgggcagggatagagtgtgggccaagctgactcctttcagtctcc 260

                                                                       
Query: 61  aagatggccttggcatggctcttctggcacatccacctcatagagcacctacactccagc 120
           |||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 261 aagatggccttggcgtggctcttctggcacagccacctcatagagcatctacactccagc 320

                                                                       
Query: 121 ctcctagctggcagagtgcaatcctgtgaagggagctcggtggagaggaggggcagaggc 180
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ctcctggctggcagagtgcaatcctgtgaagggagctcggtggagaggaggggcaggggc 380

                                                                       
Query: 181 tgcagagcctctgggcgacagaggaatcacatggcttccttgtgactcatacctgggaac 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tgcagagcctctgggcgacagaggaatcacatggcttccttgtgactcgtacctgggaac 440

                                                                       
Query: 241 ctcagtgctgggctgtaaagaagtcttgctccaaattctaagggacaagaagccacatgg 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ctcagtgctgggctgtaaagaagtcttgctccaagttctaagggacaagaagccacatgg 500

                                                                       
Query: 301 agaaagaccataaaggtgccacttcatcttgaatgttccacctgtgtcacctcacttcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaagaccataaaggtgccacttcatcttgaatgttccacctgtgtcacctcacttcac 560

                                                                       
Query: 361 agtgtggttggtcctgctatgaccaacacacagaatcatgacaacgtccatgttgtcact 420
           ||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||
Sbjct: 561 agtgtggttggtcctgctatgaccaacccacagaatcatgacaatgtccgtgttgtcact 620

                                                                       
Query: 421 tcaggctacttagctttgggccaatgtaccctgggattattcagcatatttcaggaatgt 480
           ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||
Sbjct: 621 tcaggctacttagctttgggccactgtatcctgggattattcagcatatttcaagaatgt 680

                                                                       
Query: 481 ttgagaaaggattccactctgtagcccaggttgtcctggcactcattatgtagcccaggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgagaaaggattccactctgtagcccaggttgtcctggcactcattatgtagcccaggc 740

                                                                     
Query: 541 tagcctcaatcttgtagctgtcctgcctc------tcaagtgctgggattacagatgt 592
           |||||||||||| ||||||||||||||||      |||||||||||||||||||||||
Sbjct: 741 tagcctcaatctcgtagctgtcctgcctcagcctctcaagtgctgggattacagatgt 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)