Query= MSMg01no303_i12.b1 MSMg01no303_i12.b1 CHROMAT_FILE:
MSMg01no303_i12.b1 PHD_FILE: MSMg01no303_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:28 2005
(546 letters)
>mm_chr2_126208999_126209947
Length = 949
Score = 969 bits (501), Expect = 0.0
Identities = 536/549 (97%), Gaps = 3/549 (0%)
Strand = Plus / Plus
Query: 1 gtaagaagctcttattgagttttattcacagatcactatacttttgagactaagtcgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 gtaagaagctcttattgagttttattcacagatcactatacttttgagactaagttgagg 260
Query: 61 atcacaggggttcataaagataccaaaaatgtagcacatagctaagagtcaaatcagtga 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 261 atcacaggggttcataaagataccaaaaatgtagcacatagctaagaatcaaatcagtaa 320
Query: 121 aaagcatcagcataactacagaagcatcagaagatc---aataataatcatcatcatcat 177
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 321 aaagcatcagcataactacagaagcatcagaagatcaataataataataatcatcatcat 380
Query: 178 tgcagctagccaacatacctatgacagacatccttttccggatgttgctgaaatccaaaa 237
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tgcagctagccaacatacctatgacagacatccttttccggatgttgttgaaatccaaaa 440
Query: 238 aggcaagtaactgataattcaccggtgttcccaattcttctattgtaattgtctctggag 297
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcaagtaactgataagtcaccggtgttcccaattcttctattgtaattgtctctggag 500
Query: 298 ttcgagacttaaaaatgaacccaaaatttctagcagcagtaactagagctccctcatcag 357
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 ttcgagacttaaaaatgaacccaaaatttctagcagcagtaactagagctccttcatcag 560
Query: 358 gcgattgaacttggtaaaccagttgtcctaaaagggaaagagacaaacacattctgtgct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcgattgaacttggtaaaccagttgtcctaaaagggaaagagacaaacacattctgtgct 620
Query: 418 gagggtaataattcatgctcgtatttccagtgctaatcccaatgcattctttaataacta 477
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 621 gagggtaataattcatgttcgtatttccagtgctaatccgaatgcattctttaataaata 680
Query: 478 actccagcatcaactctaaacactttgctattggactcactgtccaactgtgagtctgtc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actccagcatcaactctaaacactttgctattggactcactgtccaactgtgagtctgtc 740
Query: 538 tctccactg 546
|||||||||
Sbjct: 741 tctccactg 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 949
Length adjustment: 10
Effective length of query: 536
Effective length of database: 939
Effective search space: 503304
Effective search space used: 503304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_i12.g1 MSMg01no303_i12.g1 CHROMAT_FILE:
MSMg01no303_i12.g1 PHD_FILE: MSMg01no303_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:28 2005
(290 letters)
>mm_chr2_126357662_126358351
Length = 690
Score = 294 bits (152), Expect = 4e-84
Identities = 161/164 (98%)
Strand = Plus / Minus
Query: 124 cccccaaaggtttaaatagcctttgttctccacattaaattgagctgtctcactgaagct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cccccaaaggtttaaatagcctttgttctccacattaaattgagctgtctcactgaagct 428
Query: 184 gcctccccgttgtgctcacagtttctcagcccctagctggtcccaccttgcttcccgtcc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 427 gcctccccgttgtgctcacagtttctcagcccctagctggtcccaccttgcttcccctcc 368
Query: 244 cagtattcaccggttgtgatcgccagggctatataggtggggaa 287
|| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 367 caatattcaccagttgtgatcgccagggctatataggtggggaa 324
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
