BAC Information

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BAC

Clone NameMSMg01-303P03
Chromosome2 (Build37)
Map Location 153,594,478 - 153,594,673
singlet/doubletsinglet
Overlap geneMapre1
Upstream geneBcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932
Downstream geneEG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303P03.T7 (MSMg01no303_p03.b1)MSMg01-303P03.TJ (MSMg01no303_p03.g1)
ACCAG429385AG429386
length840844
length of high quality
(start - end)
191 (43 - 233)203 (73 - 275)
definitionCHROMAT_FILE: MSMg01no303_p03.b1 PHD_FILE: MSMg01no303_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:59 2005CHROMAT_FILE: MSMg01no303_p03.g1 PHD_FILE: MSMg01no303_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAAAAATAATCAGCAGAGACTTTGTTCTCTAGTTTTGTCTTATGAAG
AACGTTTTAATGAAAAGGAGTTGAAAAAGGAAAAATATAAAATATATGGT
TCAAGTAATAAAGGGGCACCAGGAAGTGAAATGGAGCTGAATCCTATGGG
TTTTTGTTTGTTTGTTTGTTTGGTTGGTTGGTTGCTCCTCCCTTACACTA
TTATTCTTTCTATTTTCCTTCCTTTCCATCCTTCCTTTTTTTCTCTTTTT
CCCCTCCTTCCCCCTCCTTTTTTTTTCCCCCTTTTTTCTTCTTTTTACCT
TTCCCTTCCATTACCATTCTTTTCACCTTTTCACCATTATTCCATTCTAC
CCCTTTTTTTACTTTCCTTACCTCCCCCCCCCCCCTTCCCTTTTTCTTCC
CCCTTTCTCTTTTCCTTCCCTTTTCCTCCCTTTTCCCTCTTTCTTCATAC
TACCTCTTTCCAATTTTTCTTCTCTTCACTATTTTTACCCCTTCCTTCCA
CCTTCCTTTCCCCTTCTCTTTACTTCTTCTCCCTCTCATTTTCCTCTCAT
ATTACATAAACTTTTTAAATTTTATTTTTACCCCTCATCTATTTCTAATC
GTATACTCTAATTCATCTACACCCTATCTAAAATTTCTGTGTCATTCCTC
TCCCTACTTTCCTCACTTTTCTTCTATCTACTCTTTTCCCCCTTTTCCCC
TCCCCTCTTTTCTTTCGCCTTTCCCCTCTCTTTTTGCCACACACACTCAC
CCGCCTATTTCCTCTCCATAATTTTATTTTTACCCCATTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAATAAGCAATTTTAAGCCAGGCACGA
TGGCACACACACATAATCTTTCAAGAGAATGAGGAAGAAGGACTGTGACA
AATATGAGGCCAATCAGGACAACAATACTAAAAGCTCTGTCTTAAAAACC
AAAAGGAGGGAGGAAGAGGAAAAAGAGGGAGGAAGGAAGGAAGGGAGAAG
GAGAAAGGAGGATAGAGGAAGGTTACTTCTTCTTTTTCCTTTTACGATTT
CCTCTTTCCCTTTCCCCTTCTTTTTTTTTTACTTCTTAGAGCTAATATTA
CACAATACTGCCATTTCTTTGTTCCCTCACCTTTGCATGTATTAATCAAA
TTATTTTATACCCTATCCTTTACCCCCCCCCCCTTTTTATTATTTTTTTA
TCCCCCACTACCTCCATTTTCCTTTTTTTTTTTATTCCCCCTTTTTTTTT
ATTTTTTCTTTTTTACCCCTTTATCCCCACCTCCACCAATATTTTAACCC
TTTCTCTTCCCACCCTTTTTCTTCTTTCACACTCTCCTCTTCACTAGTTT
CACCTCCTTTTCTTCTACCCTCTTTTCCCCCCTCCTTTTATTTTTTTTTG
TTTTATACCAAGCTGATTTATTTTCCACTTTACCTTTCCATTTCCCATTT
CCCCCCTTTTTACCCCTCTTTTCCTCAACATTTTCCATACTATCTCTTAT
CACTTTTCCTTTGCCCTTACTCCTCCCATGTCCTTTTTTCACTCCTTATC
CTCCCGTCTTTACCCTTTACATTCCTCTTCCCCTCCCCTGTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_p03.g1 MSMg01no303_p03.g1 CHROMAT_FILE:
MSMg01no303_p03.g1 PHD_FILE: MSMg01no303_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:59 2005
         (203 letters)



>mm_chr2_153594344_153594946
          Length = 603

 Score =  368 bits (190), Expect = e-106
 Identities = 196/200 (98%), Gaps = 4/200 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaataagcaattttaagccaggcacgatggcacacacacataatctttcaagagaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaaataagcaattttaagccaggcacgatggcacacacacataatctttcaagagaatga 271

                                                                       
Query: 61  ggaagaaggactgtgacaaatatgaggccaatcaggacaacaatactaaaagctctgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggaagaaggactgtgacaaatatgaggccaatcaggacaacaatactaaaagctctgtct 211

                                                                       
Query: 121 taaaaaccaaaaggagggaggaagaggaaaaagagggaggaaggaaggaagggagaagga 180
           |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 210 taaaaaccaaaaggagggaggaagaggaaaaagaggg----aggaaggaagggagaagga 155

                               
Query: 181 gaaaggaggatagaggaagg 200
           ||||||||||||||||||||
Sbjct: 154 gaaaggaggatagaggaagg 135


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)