BAC Information

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BAC

Clone NameMSMg01-304G20
Chromosome2 (Build37)
Map Location 115,001,002 - 115,001,471
singlet/doubletsinglet
Overlap genenone
Upstream geneAqr, Zfp770, Atpbd4, LOC100043219, LOC100043222
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304G20.T7 (MSMg01no304_g20.b1)MSMg01-304G20.TJ (MSMg01no304_g20.g1)
ACCAG429711AG429712
length1,2921,349
length of high quality
(start - end)
493 (90 - 582)710 (83 - 792)
definitionCHROMAT_FILE: MSMg01no304_g20.b1 PHD_FILE: MSMg01no304_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:03 2005CHROMAT_FILE: MSMg01no304_g20.g1 PHD_FILE: MSMg01no304_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCTAGTTTNNNNNNNNTCAATGGGCGCTATAGACTCCTATGGGAGAG
GATCCGCGGAATTCTTTGTGTTTAATATTCCTATTAATATCTTGAACAAG
AGTTAATGGTGTAAAAGATAACCTTAGAGTGTTGAAGAACAGTGTATGCA
CGTGAGTGTGTATCTCTGTGGACATGTGTGAGTGTACATGTGGGGATGTG
TGTATGTTTGAGTTTTTGTTTGTATAAGAACAAGCACATATGCACTCTTT
ACCACAGATATCAATACAGAATATTCAAAGAAATTAAAAATAAACTAATT
TTATTTTTTTATGGGAACTCATGGGATCTCTTTCTGAGGGGGGAAAACAA
TTTTATCAGCTTAGGTCTAATAGAATAGCAACATTTAATCTGCCCTAATT
TTTAGATTTCCCTTTTTCGATTAAGAGTTTAAAGTACAAATTAAGGAAGA
ATATTAGGATATAATTATGTCAATCTCCTTAACCTCAGGGCAGAATGAAA
TAAATGACCTCACCTTGCATGCATGGTGGTTTGTAAAAATCTCCTTGCCC
TCATTTGCATGTGCTTATGACTTTTTCCTAGTCAAGATCATAATTTTGCC
TACCTATCCAGCATACTGGACTTTAATCAGGGCCACATTGAGAGTTGAGA
AACCTATACTTGATACACTTGAAATAGCTACTGTTTTGATAATTTCAGAT
TACATAACTTAATCTGGTCACACTCCTTCACTCCAGAATATTTAGATAAC
ATTTGTTAATACTGAGCATTGGGGATTTACATCCTAATATAAAGAACATT
CTTCCGCGGCAAGCCTATGTTCGAAAACTGATCATAGCAATATACTCCCT
GAATTGGATGAACAAATTTGATTTACCTTAAATTTTTGGGAATGTTTTTA
ACTTATTGAACTGCGAACTTATTTTTATAATTTTGGATTGTAAAAATTAC
CCCATTTTTCTAAGAAGTCTAAAATTATTCCCTTATTTTTTGTTTTTTTG
TTGTTAAGATCCTTCATCTATATTTGTCTTCTTAATTTTTAAAGTGGTTT
TTTTTATTTTTTTTGTGTTGCTCTTTTTCTTTTAGTTATTATGTAATTTT
CCTTTATATTCTCTCTAACTTCTTAATTTATCTTTACGTTTTTACATTTA
TCTTTTTTTAATGTTCTATCTTCTATTTTTTATTTATTTATCTATTTTTC
TTCTGATATTTTTTTCCTTCATTAATAGTATTCTACATTTTCCATTATTT
ATAATACACTTTACGTTCACTTTCTATCTTCTATCCTGCTTG
NNNCCCGTTTTNNNNNNNTATGAGGTGAGGCTGGGGCGCCXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCACCTGAGGAATAT
CAAATGGCTGAGAAGCACCTGAACCTATGTTCAACATCCTTAATCATCAG
GGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCATACCAGTCAGAA
TGGCTAAGATCAAAAATTCATGTGACAGCAGATGCTGGCGAAGATGTGGA
GAAAGAGGAACACTCCCCCATTGTTGGTGGGATTGCAAGCTTGTACAACC
ACTCTGGAAATCAGTCTGGCATTTCCTTAGAAAATTGGACATAGTACTAC
CAGAGGATCCCGCAATACCTCTCCTGGGCATATATACAGAAGATGCTCCA
ACTGGTAAGAAGGACACATGTTCCACTATGTTTATAGCAGCCTTATTCAT
AATAGCCAGAAGCTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGA
TACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAA
AAGAATGAATGTATGAAATTCCTAGGCAAACGGATGAACCTGGAGGGCAT
CATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCACACAATATGTACT
CACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATATAAG
ATACAATTTGCTAAACACATGAAACTCAAGAAGAACGAAGACCAAAGTGT
GGACACTTTGCACCTTTTTAGAATTGGGAACAAAACACCCATAGAAGGAG
TTACAGAGACAAAGTTTGGAGCTGAGACGAAAGGATGGACCATCTAGAGA
CTGCCATATCCGGGGATCCATCCCATAATCAGCTTCCAAACACTGACACC
ATTGTATACACTAACAAGACTTTTGCTGGAAGGGCCCAGAAAAAACTGTC
TCCTGTGAGAATATGCCAGGGCCTACCAAAACAAAAATGGAGGGTCACCG
TCCAAATTGAATGGATACAGGGCCCCCCTGGGGGGACTTAAAAAATAACC
AGGAGCTTAGGGGAACCCCCGCAAACTAAGCCTGTATTTGAAAAATTTTA
TATCCAATATTTTATCGGTGTGAATGTGGGAACCTATTTTTTCCCTATCA
CCCACAAGCCGGAAATAAGGGACTTCTCTTTTCTTTCTTCGTTCTTCAAA
AGAAAAAGGGGCATTCAACATTTAAGGCGAAATTGTTTCCAGTTTCTTAA
CCCAAACCGGTGTAAAATAAAATAATTTTTAAACTCTAAACTCACTTTAT
TATAGGTGGGTGCCTAACAATTAAANCAACNAANNANATCTACTGCGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_g20.b1 MSMg01no304_g20.b1 CHROMAT_FILE:
MSMg01no304_g20.b1 PHD_FILE: MSMg01no304_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:03 2005
         (493 letters)



>mm_chr2_115000579_115001471
          Length = 893

 Score =  777 bits (402), Expect = 0.0
 Identities = 454/474 (95%), Gaps = 7/474 (1%)
 Strand = Plus / Minus

                                                                       
Query: 20  gtgtaaaagataaccttagagtgttgaagaacagtgtatgcacgtgagtgtgtatctctg 79
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 893 gtgtaaaagataagcttagagtgttgaagaacagtgtatgcacgtgagtgcgtatctctg 834

                                                                       
Query: 80  tggacatgtgtgagtgtacatgtggggatgtgtgtatgtttgagtttttgtttgtataag 139
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tggacatgtgtgagtgtatatgtggggatgtgtgtatgtttgagtttttgtttgtataag 774

                                                                       
Query: 140 aacaagcacatatgcactctttaccacagatatcaatacagaatattcaaagaaattaaa 199
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 773 aacaagcacatatgcactctttaccacagatatcaatacagaatattcacagaaattaaa 714

                                                                       
Query: 200 aataaactaattttatttttttatgggaactcatgggatctctttctgaggggggaaaac 259
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 713 aataaactaatttta-ttttttatgggaactcatgggatctctttctgagggggcaaaac 655

                                                                       
Query: 260 aattttatcagcttaggtctaatagaatagcaacatttaatctgccctaatttttagatt 319
           | ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 654 agttttaacagcttaggtctaaaagaatagctacatttaatctgccctaatttttagatt 595

                                                                       
Query: 320 tccctttttc---gattaagagtttaaagtacaaattaaggaagaatattaggatataat 376
           ||||    ||    |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 594 tccc---atcaataattaagagtttaaaatacaaattaaggaagaatattaggatgtaat 538

                                                                       
Query: 377 tatgtcaatctccttaacctcagggcagaatgaaataaatgacctcaccttgcatgcatg 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tatgtcaatctccttaacctcagggcagaatgaaataaatgacctcaccttgcatgcatg 478

                                                                 
Query: 437 gtggtttgtaaaaatctccttgccctcatttgcatgtgcttatgactttttcct 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtggtttgtaaaaatctccttgccctcatttgcatgtgcttatgactttttcct 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)