BAC Information

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BAC

Clone NameMSMg01-304K13
Chromosome2 (Build37)
Map Location 72,767,994 - 72,768,706
singlet/doubletsinglet
Overlap genenone
Upstream geneRapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik
Downstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304K13.T7 (MSMg01no304_k13.b1)MSMg01-304K13.TJ (MSMg01no304_k13.g1)
ACCAG429870AG429871
length1,2631,342
length of high quality
(start - end)		713 (85 - 797)821 (89 - 909)
definitionCHROMAT_FILE: MSMg01no304_k13.b1 PHD_FILE: MSMg01no304_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:36 2005CHROMAT_FILE: MSMg01no304_k13.g1 PHD_FILE: MSMg01no304_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCGCTTTTTTNNNNCCATTGGGCGCTAAGACTCCTATGGGAGAGGATC
CGCGGAATTCCTGTTTTACGTCTTGCCATTAACTTAGGAGTAGAATTGCT
AGGTCTATTGTGCTCTCGTACCCTGTTTCCCCCACCCCCCACCCCCAACA
GGGTTTCTCTGTGTAGTTCTTGCTGTCCTGGAACTCACTCTGTAGACCAG
GCTGGCCTTGAACTCAGAGATCTATCTGCCTCTGCCTCCCAAGTGCTGGG
ATTAAAGGTGCCCTGCCCCCAGCTGTGCTATTGATTTTAAATGAAAATCA
AAACATTTTTCTGGATTCTTAGATGTACTGGGAGCTTTGGCTTCACAGGG
CAGAGGAGGGGTAGAGCGTGGATCTGATGTCAGTTCCCATTCGAGGGAGC
ACCAGGAATAGATAATGATCTCCAGGCTGAGCTCAAAGCAAAGCACTTTG
TGTGTCTGCCTAGGCAGCTCTTTTCTTTGGCTCGCTGGACCAGGAGGTGT
GATTCTCATCCATGTCTTTCGATTTTGGCTTGCATGGCAGCAGTTAAGGA
CTCTTGGGGTCTCACACATATCCATTCACCACAGTCACCTTCCTTCGGTG
AGCCTGAACTCAAGTGGGAAAAACAAAAGCTTCTCTTGAGAATAACACTG
ACGGTGTCACTTAAATGCAACCAAGTTATGATGATCTAAATCTTTTTTTT
CCCAAGACCAAGAGTATACTCTTGGGTTAGTTGGAAAGTCTCAAATAAAA
TTTGAAGTTTATATATTCTGAGTAGAATAGTGGTAGTGAACATTTAGATT
TCCTCAGCACGTTATGTATGTCCTATGGCCTTTTTGTAGTGATATAACCA
TAGCAGATTCGTGTTTTGTTTGAAGAGAAATTTGTCTCTTTATGTTAATG
GAAGGTCTCTTTCTCTTTAATACTTGCCAATTTAATTCCCTTTTTTTAAA
AGGGAGAAGGAACGAAGTTTTCTGCCCCGAATTAAACTTAACCTTCCCCT
TTTGTGGACAAAACCAAGGGGGATAGAAAGGCCTAAAACATGTTTTTTTT
GTTCCCCCTCCCCCCCCAGTTTTTTACAAAAAAAAAATTAGGGGAAAATA
CCTAACACTTTTTTTTTTTTTTTTTACCACAAAAATCAACGCTCCTCTTT
ATAATTTTCTTTTCTTTGGTAATACCCACCCTATTGCTCCACTTATTTTC
CCTTCNTTTTATATTTCTTGTAATTATCATCTTTCACTCATTATTTNCAA
TTTTATCTAATTA

NNCCTTCTCTTTTNNNNATGCATGGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTCTGCTGTCCAAATCCA
AAGTCCCAAAATCCACATTCTTCTAAACAAAAGAATGGTCAGGTCTATCA
CAGAGCTGGAGAAGTGGCTCAGCAGTTAGGAGCACTGAGTGCTCTTCCAG
GGGTCCTGAGTTCAATTCCTAGCAACCACATGTTGACTCACAATCATCTG
TAATGTGATCCAATGCCCTCTTCTGGTGTGTCTGAAGATATAGCTACAGT
GGACTCATATCCATACAAATAAATAAATAAATCTTAAAAAAAAAAAGAAC
TATAGTTAACGTGTGTCTGTTAGACAGCAGGAGTAGACTCATGCCTTTGA
GACCTAATAAAAGCTATAGGTTTGGGTTAAAAGACACAGAAGTTTCTTTC
TTCAATCCAGGGGGCTAGATATGGACTGAACAGCGTTGCTTTTAGCGTGA
CGAGAAGCACCTCTAAGTTTATATTCAGAAGACAACCAAAAGGAAGTTAA
TATCTTGAGCTTGTGGCTGAACTGTAAACTGCCAGTGTTCCATTAGCTTA
TTAGAACTCCGCTGATCAATGTTAAAATTCTGAACTTTGAAAAAACAATA
GCATGTGGGAGGAATATGGAACATTTTCCATTTTTTATAGCTTAAATGAT
TTCTTATATCTCTATAACTTGCACTTATATACCTTAAATCATCTTCTTAG
ACCCTCCAACATTTATAACTTGTATTTACCAACTTGAAACATCTTTCAAC
GGAAGCATTTCTTACTTCTAAATCATTGATATCCAAGTTCTTTTATACCT
TCTAACCTTTATCATTTGCTTTTATCAATCTCAAACATTTTCCATAAACA
TTTTTCTTAGACCTTAACTTGCTGGATTAAATCATAACTCACCTGTGCCA
GTCCAGGAAGGGAGGGACAGAAAGGACCTCCCCCTGCGGGTGCTGGGAGA
TCCCACTCTGTGCGGGTCCCCTATCCATCCTCTCCTGGAGTTTATCCCGG
GGCTCGGGGAAAAAGAAAAAAGAACCGTCTTGAATGGGTTTGGCAGGAAC
AATTTTGTTGCCCTCTTTCCTAAAATTTTTATAATTTATAAAAGAAACAC
CGGGTCCGGTCCGCTCTTTCTTTCTTTTTTTTTTTTTTNTNGTGGGGGGG
GGGGGGCNTTCTTATTTCTTANACATATTTTTATTCCTCTCTTTACTCGG
CTTTTCTGTANATATTAGGGAATTTTTCTATCTTTTCATTGATACCAGTT
GCTCTATTCGTTTTTTATCTATTANGTATGCCAAGTATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_k13.b1 MSMg01no304_k13.b1 CHROMAT_FILE:
MSMg01no304_k13.b1 PHD_FILE: MSMg01no304_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:36 2005
         (713 letters)



>mm_chr2_72767607_72768719
          Length = 1113

 Score = 1309 bits (677), Expect = 0.0
 Identities = 704/713 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    taggagtagaattgctaggtctattgtgctctcgtaccctgtttcccccaccccccaccc 60
            |||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct: 1100 taggagtagaattgctagatctattgtgctcttggaccctgtttcccccaccccccaccc 1041

                                                                        
Query: 61   ccaacagggtttctctgtgtagttcttgctgtcctggaactcactctgtagaccaggctg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1040 ccaacagggtttctctgtgtagttcttgctgtcctggaactcactctgtagatcaggctg 981

                                                                        
Query: 121  gccttgaactcagagatctatctgcctctgcctcccaagtgctgggattaaaggtgccct 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980  gccttgaactcagagatctatctgcctctgcctcccaagtgctgggattaaaggtgccct 921

                                                                        
Query: 181  gcccccagctgtgctattgattttaaatgaaaatcaaaacatttttctggattcttagat 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920  gcccccagctgtgctattgattttaaatgaaaatcaaaacatttttctggattcttagat 861

                                                                        
Query: 241  gtactgggagctttggcttcacagggcagaggaggggtagagcgtggatctgatgtcagt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860  gtactgggagctttggcttcacagggcagaggaggggtagagcgtggatctgatgtcagt 801

                                                                        
Query: 301  tcccattcgagggagcaccaggaatagataatgatctccaggctgagctcaaagcaaagc 360
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800  tcccattccagggagcaccaggaatagataatgatctccaggctgagctcaaagcaaagc 741

                                                                        
Query: 361  actttgtgtgtctgcctaggcagctcttttctttggctcgctggaccaggaggtgtgatt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740  actttgtgtgtctgcctaggcagctcttttctttggctcgctggaccaggaggtgtgatt 681

                                                                        
Query: 421  ctcatccatgtctttcgattttggcttgcatggcagcagttaaggactcttggggtctca 480
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680  ctcatccatgcctttcgattttggcttgcatggcagcagttaaggactcttggggtctca 621

                                                                        
Query: 481  cacatatccattcaccacagtcaccttccttcggtgagcctgaactcaagtgggaaaaac 540
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 620  cacatatccattcaccacggtcaccttccttcggtgagcctgaactcaagtgggaaaaac 561

                                                                        
Query: 541  aaaagcttctcttgagaataacactgacggtgtcacttaaatgcaaccaagttatgatga 600
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 560  aaaagcttctcttgagaataacactgacggtgtcacttaaatgcaaccaagttacgatga 501

                                                                        
Query: 601  tctaaatcttttttttcccaagaccaagagtatactcttgggttagttggaaagtctcaa 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500  tctaaatcttttttttcccaagaccaagagtatactcttgggttagttggaaagtctcaa 441

                                                                 
Query: 661  ataaaatttgaagtttatatattctgagtagaatagtggtagtgaacatttag 713
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440  ataaaatttgaagtttatatattctgagtagaataatggtagtgaacatttag 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space:   775409
Effective search space used:   775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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