BAC Information

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BAC

Clone NameMSMg01-305O03
Chromosome2 (Build37)
Map Location 12,626,198 - 12,626,538
singlet/doubletsinglet
Overlap genenone
Upstream geneIl15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
Downstream geneLOC100040837, Pter, C1ql3, Rsu1, Cubn, Trdmt1, Vim, St8sia6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305O03.T7 (MSMg01no305_o03.b1)MSMg01-305O03.TJ (MSMg01no305_o03.g1)
ACCAG430707AG430708
length1,2761,285
length of high quality
(start - end)
420 (32 - 451)328 (72 - 399)
definitionCHROMAT_FILE: MSMg01no305_o03.b1 PHD_FILE: MSMg01no305_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:22 2005CHROMAT_FILE: MSMg01no305_o03.g1 PHD_FILE: MSMg01no305_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGACGCATTGGGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATT
CTACCAAGAGGTTTATCTCAAATTGTAGATCAAAGGCCTCTGTCATAGTT
CCCCTCAAATATTTTGCTCACCAGCCCACTTTGAAGCTACAGTGACAAGG
CTACCTACAGAATGAAATTCCTTTCCTCCTGCTGTTCTAACAAACTGGTA
CAAACTTGATGTTCTAACACAGCACAAACTTATTTTCATATGCTTCTGGA
CGTCAGAAGCCCAGAATCAGTTCTGGAGCACTAAAGACAAAGTGACACTA
GGCCTCCCGTGTTCCTTCTTGGATCTCTGGTGAGAGCTCAATTTCCTTCT
CATCTCCAGCTTCTGCAAATCTACTTTTGTTTCTTGTCTCATGGCTGCTT
CTTTCATCTTTAAATCCTAATGAGCAGCATTCCCTCAACAACTCTAAGCT
TTTTTTTTTTCCCCCCCCCCCCTCTTGCTCTTGCTTTCACAAAAAAAAGG
AGGATTATACAGGGCCCAACAAGGATCCAAAATGATCCCTAATCTTAACC
ATGTCTAAAAATTTGCTCTTTACCATATAAGGGGATCGAATATGCACATC
ATTGGCTGATACTGTTAACCTGACACAAATGATCTCTTTCCCCAATGTTG
ATAGTAATGATTGAAAACGTTGCTCAATTATCCTTTTTTTCTTCTTTCTC
TCCCTTTCTCTCTCACCATGTGAAATCTGGTGGAGAGATGCACTGTGAAC
TTCAGGTCATAACTGGGACTCTTGATGTCAAGGAAATAGAAAGCTGTTCT
GTCTCCGTCCTGAAAAGCAAACGTGAAGATTTCGTCTTTAGTCCTACAAG
GACATTGTGGACTGAAATCAAGATAGAGCAAATGCCATTTGGAAGATTAC
CTAAAATTTACACGTGATAATTTGCATCATTCTAATATGATTTGCAATGA
AACATTTCATCCCAGGATTCCCCAAAACATAATTCTCTCATGTTAAAAAA
ATGTGCCCCACCAGGTAAAACCAAGAAAGTTAATGCCGGACCCAGCTTCC
ATGGTTAATTTTTTTAAAAGGACCATGCGTGAAAAAATTCCCCCAAACTC
AAAATATTTTTTTAACACTAAAAACTTTTTTCCCAAATTTTGTAAATCTA
AAAGAAAACCCCCCATACACAAGGGTAAAACTCCTGCCCCAAAAAATTAA
ACATGTTTTTTTTTTTCCCCCCCCTTAAAAAAAAAAATAAATTAAAACCC
TTTCTTTCTTTGTCTCTCAAAATTAA
NNTTCAAATCATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGACACTGACACTTAT
AGAGGAGAAAGTGGGGAAGAGACTGGAAGATATGGGCACAGATGAAAAAT
TTCTGAACAGAACAACAATGGCTTGTGCTGTAAGATCAAGAATCCACAAA
TGGGACCTCATAAAATTGTAAAGCTTCTGTAAGGCAAAGGACATTGTCAA
TAAGACACAAAGGCAACCAACACAGTGGAAAAAGATCTTTACTAATCCTA
AATCTGGTAGGGATCTAATATCCAATATATATAAAGAACTCAAGAAGCTG
AACTTCAGAAAACCAAATAATCCTATTAAAAAAGAACAATGGATACAGAA
TATTTTGTACATTTACACAATGGAGTACTACTTAGCTATAAAAACAATGG
TTTTATTTTTTTCTCCCCCCCCCGGANANATCTGCACCATAAAAAAAAAA
GGGAGGTAACCCAATTACAAAAGAAGTCATTAGATATGCACTCACTGATA
AGTGGATATTAGCCCAGAAACATTAAACACCCAAGATACAATTTGCAAAT
GACAAAAAAATCAAGAAGAGGGAAGACCAATGGGTGGATACTTCATTCCT
TCTTAGAAGAGGGAACAAAATACCCATGAAATGAGTTACAGAGACAAAGT
TTGGAGCTAAGACGAAAGGATGGACTATCCAGAGACTACCCCACCTGGGA
TCCATCCCATAATCAGTCACAAAACCCAGACACTATTGCATATGCCAGAA
AGATTTTGCTGAAGGGATCCTCTTATAGCTGTCTCATATGAGGCTAAGAT
AGTGCCTGGCAAATACAGGAGTGGATGCTCACAGTCATCTATAATATGGA
ACACAGGGCCCTCCATGAAGAAGCTAGAGAAAGCACCCCAAGAGCTGATT
GGGTCGGCAACCCTATAGGTGGAACATCAATATGAACTACCCAGTACCCC
TCAAAGCTGTATTCCTAGCTGCCTATGTAGCAAAAGAAGGCCTATTCGGC
CCTCCCTGGAAAAAAGCCCCCTTGGATTGTCAATTTATAACCCCCCAACA
GGGAAAGCCCGGCCCAAAAACGGAATGGGTGGGTAGTGGAAAGACCAAAA
GAAGGTGTAATAATTCTCCCAAATCTTTTAATGTTTTATAACAAATCCTC
TTTATACACTAATATATTTTAAAAAACCGGTTCAGATTAATAAATATCCC
TCCGTAAACATTTTGGGATAACCCATACAACTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_o03.b1 MSMg01no305_o03.b1 CHROMAT_FILE:
MSMg01no305_o03.b1 PHD_FILE: MSMg01no305_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:22 2005
         (420 letters)



>mm_chr2_12626198_12627018
          Length = 821

 Score =  605 bits (313), Expect = e-177
 Identities = 334/341 (97%), Gaps = 1/341 (0%)
 Strand = Plus / Minus

                                                                       
Query: 15  gaattctaccaagaggtttatctcaaattgtagatcaaaggcctctgtcatagttcccct 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaattctaccaagaggtttatctcaaattgtagatcaaaggcctctgtcatagttcccct 282

                                                                       
Query: 75  caaata-ttttgctcaccagcccactttgaagctacagtgacaaggctacctacagaatg 133
           |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 caaatattttttctcaccagcccactttgaagctacagtgacaaggctacctacagaatg 222

                                                                       
Query: 134 aaattcctttcctcctgctgttctaacaaactggtacaaacttgatgttctaacacagca 193
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 221 gaattcctttcctcctgctgttctaacaaactggtacaaacttgatgttttaacacagca 162

                                                                       
Query: 194 caaacttattttcatatgcttctggacgtcagaagcccagaatcagttctggagcactaa 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 caaacttattttcatatgcttctggacgtcagaagcccagaatcagttctggagcactaa 102

                                                                       
Query: 254 agacaaagtgacactaggcctcccgtgttccttcttggatctctggtgagagctcaattt 313
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 101 agacaaagtgacactaggcctcccgtgttccttcttgggtctctagtgagagctcaattt 42

                                                    
Query: 314 ccttctcatctccagcttctgcaaatctacttttgtttctt 354
           ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 41  ccttctcatctccagcttctggaaatctacttttgtttctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 821
Length adjustment: 9
Effective length of query: 411
Effective length of database: 812
Effective search space:   333732
Effective search space used:   333732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)