BAC Information

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BAC

Clone NameMSMg01-306I04
Chromosome2 (Build37)
Map Location 60,006,556 - 60,006,844
singlet/doubletsinglet
Overlap genenone
Upstream genePkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps
Downstream geneLOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306I04.T7 (MSMg01no306_i04.b1)MSMg01-306I04.TJ (MSMg01no306_i04.g1)
ACCAG431151AG431152
length837759
length of high quality
(start - end)
---289 (81 - 369)
definitionCHROMAT_FILE: MSMg01no306_i04.b1 PHD_FILE: MSMg01no306_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:19 2005CHROMAT_FILE: MSMg01no306_i04.g1 PHD_FILE: MSMg01no306_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGAGGATCCG
CGGAATTCCAGGACAGTTTTCGCTATACAGAGAAACCCTGTCTCAAAAAA
AGAAAGAAAGAAAGAGAGAGAGTTTTATATTCAGAGAGAGAGAGTGAGAG
GGAGAGAGAGAGAGAGAGTGTTTTTGTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT
TGTTTCGTCTTTTTTGTTTGNNGNNGANNGNNTTTTTTTTTTTTTTTTTT
CTCCCGCGGTGCCTGCGAGGAGGATTTTTGGTGGTTTTCCGCCCCCCCCC
CCANAAAAAATTTTTGAGGAGTGTTTTTTTTCTTTCTTTTTTTTTTATTT
ATAATTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTCTTT
TTTTCTTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTT
TTTTTTCTTCTTTTTTCTTCTTTTTTTCTTTCTTTTTTTTCTATTTTTTT
TATTTCTTTCTTTTTTTCTTTTTTTTTTTTTTTTTTTTCTTTTCTTTTTT
TTTTCTCTCTTCTTTTTTTCCTTTTTTTCTTTTTCCTTCTTCTTTTTTCT
TTTTCTTTTTTCCTTTCTTTTTTTTTTTTTTTCCTTTTTTTTTTCTTTTT
TTTTCTTTTCTTTTTTCTTTTTTCTTTCTTTTTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGAAGCTACATCTGTAAG
CCTCTGGTAGAGACTGCAGACTTCTGAAGTACAGGAACCTATCAGTTTCA
AGCATGGAGGATTTGACTTCTCACAGTGTCAGGCTCATGTCCTCCTCTTC
CTTGACTGCTCTGCCTTGCCTAACAATTCAACAATATCAACCCCTCCCCA
AATGTTTTGTTTGTTTTTGAAAGGGCTTCTCTGTGTAACCTGTCTTAGGT
CTGACTGTGTGGACCAGGCTGGCTTTGAACACACAAAGATCCACCTGCCT
AGCAAGAAAGTATGTGCTATTTTTTCTGGCTCCCACCCCAGCTTTGAAGA
GAAGGTTCCCTCATTGCACCTTGCTGAGACAAGGACACTGAATGTTTCCA
CCACTGTGCTGAATGCACACTGCAGGAGAGCCAGCTTTCACAGTTTCAGC
CAATTCACCCACGTCTAGCTCCCATCTCATGGTAGGGATGGTGTTACAGA
TGTATGCTGCTGCATCCATCTCTTTATGTGGGTTCTGTGGATCAAACTCA
GGTTGACAGGCCGGTGTGGCCAGCACCTTTCCCTGCAGAGGCAACTTCCC
AGCCCTGGAGCACATACTTTTACTCTGCTCCCAGTTTTAGGGGAAATGCA
TCTAGNTTTCCCTATTTAGTAGGTTGGCGAAGGCGTTGTGCTATTTAGTC
GTTATTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_i04.g1 MSMg01no306_i04.g1 CHROMAT_FILE:
MSMg01no306_i04.g1 PHD_FILE: MSMg01no306_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:19 2005
         (289 letters)



>mm_chr2_60006356_60007044
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggaagctacatctgtaagcctctggtagagactgcagacttctgaagtacaggaacct 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 agggaagctacatctgtaagcctctggtagagactgcagagttctgaagtacaggaacct 260

                                                                       
Query: 61  atcagtttcaagcatggaggatttgacttctcacagtgtcaggctcatgtcctcctcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcagtttcaagcatggaggatttgacttctcacagtgtcaggctcatgtcctcctcttc 320

                                                                       
Query: 121 cttgactgctctgccttgcctaacaattcaacaatatcaacccctccccaaatgttttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 cttgactgctctgccttgcctaacaattcaacaatatcaaccccttcccaaatgttttgt 380

                                                                       
Query: 181 ttgtttttgaaagggcttctctgtgtaacctgtcttaggtctgactgtgtggaccaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtttttgaaagggcttctctgtgtaacctgtcttaggtctgactgtgtggaccaggct 440

                                                            
Query: 241 ggctttgaacacacaaagatccacctgcctagcaagaaagtatgtgcta 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctttgaacacacaaagatccacctgcctagcaagaaagtatgtgcta 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)