Query= MSMg01no306_l07.b1 MSMg01no306_l07.b1 CHROMAT_FILE:
MSMg01no306_l07.b1 PHD_FILE: MSMg01no306_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:34 2005
(517 letters)
>mm_chr2_32234191_32235107
Length = 917
Score = 969 bits (501), Expect = 0.0
Identities = 513/517 (99%)
Strand = Plus / Minus
Query: 1 gaggcccctggcgatgccagcccctaggtgccgggagcccccatccaggtcctaccctca 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 717 gaggcccctggcgatgccagcccctaggtgccgggagcccccatccaggccctaccctca 658
Query: 61 cctctctaggccatgttctggcctgggtagatactacttggcttagacaccatctcgggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cctctctaggccatgttctggcctgggtagatactacttggcttagacaccatctcgggt 598
Query: 121 actggcctccagatcctagtgggtctaccagcctggaccagtccccattcactgcccatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 actggcctccagatcctagtgggtctaccagcctggaccagtccccattcactgcccatc 538
Query: 181 acccttcctggagtcaggtgcaatcctacagttctcccacttgtctgtcttctttcccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 acccttcctggagtcaggtgcaatcctacagttctcccacttgtctgtcttctttcccct 478
Query: 241 ccatccagactgatagtccgaattaaagatgtctcccacaccactgcccccttcttcttt 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ccatccagactgagagtccgaattaaagatgtctcccacaccactgcccccttcttcttt 418
Query: 301 gtgcccagatgaggaccctagtagccaccggagggcagtggagcagagaccatgacccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtgcccagatgaggaccctagtagccaccggagggcagtggagcagagaccatgacccat 358
Query: 361 gggccatgtgatggggctctgagccacctttcatttccaagggtgtgggtgaggtcaggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gggccatgtgatggggctctgagccacctttcatttccaagggtgtgggtgaggtcaggc 298
Query: 421 ttcctctctggctggtgtgttgctctggcggctgcttcccagctgatgcaggcacactgt 480
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 297 ttcctccctggctggtgtgttgctctggcagctgcttcccagctgatgcaggcacactgt 238
Query: 481 gtgactgagatacagtcagactccctgggcactaggg 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 gtgactgagatacagtcagactccctgggcactaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_l07.g1 MSMg01no306_l07.g1 CHROMAT_FILE:
MSMg01no306_l07.g1 PHD_FILE: MSMg01no306_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:34 2005
(508 letters)
>mm_chr2_32047747_32048654
Length = 908
Score = 832 bits (430), Expect = 0.0
Identities = 500/546 (91%), Gaps = 38/546 (6%)
Strand = Plus / Plus
Query: 1 aaggatctgcccgtattgttcggtcccgaggcctcttctgtagatggtactgacggcaag 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 163 aaggatctgcccgtattgttcggtcccgaggcctcttctgttgatggtactgacggcaag 222
Query: 61 tcggaggcacagtcctgaagccaagtgaacaccgtgccactctggcaaaacagccacttt 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 223 tcggaggcacagtcctgaagccaagtgaacaccatgccactctggcaaaacagccacttt 282
Query: 121 gccgaatgtgcacagtgctg-aggggctggtcagtgttaggagagccctgctgtgactga 179
||| |||||||||||||||| | |||||||||| ||||||| ||||||||||||| ||||
Sbjct: 283 gcccaatgtgcacagtgctgaaagggctggtcaatgttaggggagccctgctgtggctga 342
Query: 180 gatgggtcaccctgggggctaaagtgtggaaacag------------------------- 214
|||||||||||||||||||||||||||||||||||
Sbjct: 343 gatgggtcaccctgggggctaaagtgtggaaacagaaccagcttctagattgttccctct 402
Query: 215 ---g-ggtgagaagcaaatggcctgagggtgttcctggcttcttggcctcccgtgtacct 270
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 403 cctgaggtgagaagcaaatggcctgagggtgttcctggcttcatggcctcccgtgtacct 462
Query: 271 ca--------ggtcttttttcttggtggtggtggtgagcgctaggtcctttcctgtttca 322
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cagggccgccggtcttttttcttggtggtggtggtgagcgctaggtcctttcctgtttca 522
Query: 323 gctcctaaccggaagtggatagggaggagtctggattcattcctgtctggccccacagtc 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gctcctaaccggaagtggatagggaggagtctggattcattcctgtctggccccacagtc 582
Query: 383 ctgctagatgcagtggggccacaggagttacctgcagtgacagtttagagacgcactgag 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctgctagatgcagtggggccacaggagttacctgcagtgacagtttagagacgcactgag 642
Query: 443 gacaaatacacactgaggaagcgggtgatgtcacacctgggatgtttgtctccttttgca 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gacaaatacacactgaggaagcgggtgatgtcacacctgggatgtttgtctccttttgca 702
Query: 503 attgat 508
||||||
Sbjct: 703 attgat 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
