BAC Information

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BAC

Clone NameMSMg01-306O06
Chromosome2 (Build37)
Map Location 55,770,810 - 55,771,111
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt13, LOC666936, Kcnj3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306O06.T7 (MSMg01no306_o06.b1)MSMg01-306O06.TJ (MSMg01no306_o06.g1)
ACCAG431418AG431419
length767773
length of high quality
(start - end)
685 (44 - 728)306 (76 - 381)
definitionCHROMAT_FILE: MSMg01no306_o06.b1 PHD_FILE: MSMg01no306_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:48 2005CHROMAT_FILE: MSMg01no306_o06.g1 PHD_FILE: MSMg01no306_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTATTTTTCCCAAATTGTAATTGAACTTTTGGCTGGGTATGGTAGG
ATGTTCTGCTATCTATGTTCTCTAAAGTCTATATGCTTCTGTCGAGACTC
TTTCTGGCTTTCAAAGTCTGCATTGAGAAGTCAGGTATTATTTTTAATTG
TTTACATTATGTTAATATTTTTATATGTTTATCCTAGAATAGGCTATATG
TTTATGTTTCCTCAGTTTTTCGCTTGCAGCTTTTAATATTTATTCTTTCT
TTATTTTATAAATTTAGTGTTTTGATTATGATATGTAGAGTTAAACATCT
TTTGTAGTCCAGTTTATTTAATGCTCTGGATGCTTCTTGTAATATAATAC
ATATCATCTTCTTTAGGTTAGAAAACTTTTATTTTATGATCCTTTTGAAA
ATTTTTTTTGCACCTGTCAGTTGGATTTCTTCTTCTTCTATTCCTACCAT
CCTCTGATCTTTCATAGAATCTGAGGTTTTCTTGATGCTTTATGGTTTCA
TTTGTCTTAGATTTAACATTTCTTTGTTCAAGATATCCATTTTTTCTCTT
GTGTCTTTAATGTCTGAAATTCTCTCTACCATCTCCTGTACATTCTGTTT
GTAAGGATTACCTTGACCTTCCTGTTTGAGTTCCTAAGTTTTTCATTTGC
AGATTATTCTCATCTTGGGTTTTCTTGGTTGATTCAAAGTTTATCTTCAG
GTCTTAAATTGTTCTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGATATAGGTATGCATCAAACCCT
AACAATGGAGTTACAGTTAATTTTCAGCTACTTGCCTTGGGTGCTGTGAA
CAGGACCTGTGCCTGCTCTATACAAGAGAATCACTCTTAGCTGTGGAATC
ATTTGTCCAGCCCCATCGTTCAAGTGTTTAGTAATCATGATAAAAACTAT
TTTTATTGTTTAAGCACCAGATAGAATGATCAGAAGTCACTACATTCTGA
CCAACCTGGGTCACAAGACCTTATCTCAAGGAAAATAAATATCACTGTTT
TATACAAGAGGTATAGTATTGTTTATTCCCCCCACTCCAGATCAACAGTC
TTTCTGAGAGGGTGAGTGAGTGAGTGAGTGAGAGAGAGAGTGAGTGAGTA
AGAAGTGACAAAGAAGATGTTTATTTCTTCTAGTTTTAGGAATACACTGA
AAGTAGTGGTAGCAAAATAGATGTGTGTGAGAGAGAGAGATTTAAAGCAC
TGAAAAGCAATAAAAATGAGCATTTGAATGAAAGTGAACATATTTAAATG
AAAAACAAGTTTTATGTGTTTTTTTTTATGACTATGTATAGATTTAGTTA
AGGTATCCTTTCTAAAGTTGTGTCAGAGAAATGGAGCAGCTGTTTGCATA
TTTGATCCTTCTTCCTGGCCCATAGTAATATATTTAATGACTGGTCCACA
TCTGAAAAATGATGTTATCAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_o06.g1 MSMg01no306_o06.g1 CHROMAT_FILE:
MSMg01no306_o06.g1 PHD_FILE: MSMg01no306_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:48 2005
         (306 letters)



>mm_chr2_55770467_55771172
          Length = 706

 Score =  563 bits (291), Expect = e-165
 Identities = 300/303 (99%), Gaps = 2/303 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatataggtatgcatcaaaccctaacaatggagttacagttaattttcagctacttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cagatataggtatgcatcaaaccctaacaatggagttacagttaattttcagctacttgc 586

                                                                       
Query: 61  cttgggtgctgtgaacaggacctgtgcctgctctatacaagagaatcactcttagctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cttgggtgctgtgaacaggacctgtgcctgctctatacaagagaatcactcttagctgtg 526

                                                                       
Query: 121 gaatcatttgtccagcccca-tcgttcaagtgtttagtaatcatgataaaaactattttt 179
           |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaatcatttgtccagcccaattc-ttcaagtgtttagtaatcatgataaaaactattttt 467

                                                                       
Query: 180 attgtttaagcaccagatagaatgatcagaagtcactacattctgaccaacctgggtcac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 attgtttaagcaccagatagaatgatcagaagtcactacattctgaccaacctgggtcac 407

                                                                       
Query: 240 aagaccttatctcaaggaaaataaatatcactgttttatacaagaggtatagtattgttt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aagaccttatctcaaggaaaataaatatcactgttttatacaagaggtatagtattgttt 347

              
Query: 300 att 302
           |||
Sbjct: 346 att 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)