Query= MSMg01no307_d16.b1 MSMg01no307_d16.b1 CHROMAT_FILE:
MSMg01no307_d16.b1 PHD_FILE: MSMg01no307_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:13 2005
(692 letters)
>mm_chr2_77727165_77728256
Length = 1092
Score = 1253 bits (648), Expect = 0.0
Identities = 676/688 (98%), Gaps = 7/688 (1%)
Strand = Plus / Minus
Query: 6 gaattctcattg-tacccagattgggatgacctggtggtgagcagtactgtcccctcctt 64
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gaattctcattgatacacagattgggatgacctggtggtgagcagtactgtcccctcctt 803
Query: 65 actatattatgcttgcacattctcacttgcttttgactgcaagtaggaggaggtatagtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 actatattatgcttgcacattctcacttgcttttgactgcaagtaggaggaggtatagtg 743
Query: 125 atggctataaaaacagcaaagacctctgagtgtcttttgttcctttatggaaacatgtat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atggctataaaaacagcaaagacctctgagtgtcttttgttcctttatggaaacatgtat 683
Query: 185 atgagtaattttacatgaggataattgccttactagaaaccactgttctatttttataaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atgagtaattttacatgaggataattgccttactagaaaccactgttctatttttataaa 623
Query: 245 tgacagagaacctccttcctacagtattcctgggctttgaaaggtacagatgcaaggagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 622 tgacagagaacctccttcctacagtattcctgggctttgaaaggtacagatgcaa-gagt 564
Query: 305 caattcacaaaacaaaatccactttaatattaccagtaaggagggctaagtatgtatttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caattcacaaaacaaaatccactttaatattaccagtaaggagggctaagtatgtatttt 504
Query: 365 aattgctttaaggcaggcactaggttttagagcgcattatgttaaccagtaacttatttt 424
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aattgctttaaggcaggctctaggttttagagcgcattatgttaaccagtaacttatttt 444
Query: 425 cccatacttctgtaataagaactgccgagcagtaacagactgaacattttcagtatctca 484
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 443 cccatacttctgtaataagaactgccgagcagtaacagactgaacgttttcagtatctca 384
Query: 485 cagtagaaaagtctgaaaaatcccactccacgcatgcatgcagatattctttcttgaaac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagtagaaaagtctgaaaaatcccactccacgcatgcatgcagatattctttcttgaaac 324
Query: 545 acagcgaattggtggaaagtgaatgtaccccgattcctgacgttcctgaatgcttttgtc 604
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 323 acagcgaattggtggaaagtgaatgtaccccgattcctgacgtttctgaatgcttttgtc 264
Query: 605 tgtcgttatacttttgtctgatgagggaggaacaacactctcagagatagttatcaatgg 664
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgtcgttatacttttgtcagatgagggaggaacaacactctcagagatagttatcaat-- 206
Query: 665 aggggaggggaggggaggaaaactacct 692
|||||||||||||||||||||||||
Sbjct: 205 ---ggaggggaggggaggaaaactacct 181
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_d16.g1 MSMg01no307_d16.g1 CHROMAT_FILE:
MSMg01no307_d16.g1 PHD_FILE: MSMg01no307_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:13 2005
(674 letters)
>mm_chr2_77763436_77764508
Length = 1073
Score = 1191 bits (616), Expect = 0.0
Identities = 659/680 (96%), Gaps = 14/680 (2%)
Strand = Plus / Plus
Query: 1 aaataaaacatgatgattcccttcatttttcttcaaagttcttgctcatcttccccagcc 60
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 201 aaataaaacatgatgattcccttcatttttcttcacatttcttgctcatcttccccagcc 260
Query: 61 accccccttctcactctgctctaattagaacgtgaactggaataaaggacaaaataacaa 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 a-cccccttctcactctgctctaattagaacgtgaactggaataaaggacaaaataacaa 319
Query: 121 accgaaaggtaacaccatctcggcagcgatgctgggaactctgcctgcagggtcaggaac 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 accgaaaggtgacaccatctcggcagcgatgctgggaactctgcctgcagggtcaggaac 379
Query: 181 aagctatgctgttcatcaaactacccaagttcaatggagtacccacccatccaagttcta 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagctatgctgttcattaaactacccaagttcaatggagtacccacccatccaagttcta 439
Query: 241 gtggcattttccagaagaaaaaaagctcttaaaattaatacagagtataaaaaatacaaa 300
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 gtggcattttccagaagaaaaaaagctcttaaaatta----agagtataaaaaatacaaa 495
Query: 301 tagcc-------aaaaaaaccaaaatcttcaggaaagaaagaaaaagcaagagagacctt 353
||||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 496 tagccaaaaaaaaaaaaaa--aaaatcttcaggaaagaaagaaaaagcaagagacacctt 553
Query: 354 ttacttgatttaaaacttactactacacaaagacatagtaataaaaacagcatggtactg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttacttgatttaaaacttactactacacaaagacatagtaataaaaacagcatggtactg 613
Query: 414 ccataaagcttaatagaaaccaacagagaacagaacaaaacacctagagataaattcata 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ccataaagcttaatagaaaccaacagagaacagaacaaaacacctagagataaattcata 673
Query: 474 catttttatttaactgtattttgacataaaggcaatgtgttccaaagtgataggaaagcc 533
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 catttttatttaattgtattttgacataaaggcaatgtgttccaaagtgataggaaagcc 733
Query: 534 agatgccaacatgcagagaaataaaaacacactttaatcttacgcaacacacacaaagca 593
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 734 agatgccaacatgcagagaaataaaaacatactttaatcttacgcaacacacacaaagca 793
Query: 594 atctaaactgattaacaaacagaatctgtacaacttccaggagggaagcttgacaatatc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 atctaaactgattaacaaacagaatctgtacaacttccaggagggaagcttgacaatatc 853
Query: 654 tgcctggattgacacatttc 673
||||||||||||||||||||
Sbjct: 854 tgcctggattgacacatttc 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1073
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1063
Effective search space: 705832
Effective search space used: 705832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
