BAC Information

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BAC

Clone NameMSMg01-307E11
Chromosome2 (Build37)
Map Location 75,112,317 - 75,263,439
singlet/doubletdoublet
Overlap genenone
Upstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
Downstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307E11.T7 (MSMg01no307_e11.b1)MSMg01-307E11.TJ (MSMg01no307_e11.g1)
ACCAG431694AG431695
length734742
length of high quality
(start - end)
248 (63 - 310)247 (70 - 316)
definitionCHROMAT_FILE: MSMg01no307_e11.b1 PHD_FILE: MSMg01no307_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:17 2005CHROMAT_FILE: MSMg01no307_e11.g1 PHD_FILE: MSMg01no307_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,112,317 - 75,112,507)(75,263,194 - 75,263,439)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTATCATAGAAGACCGCGGAATTCTC
TCTTTTCCTGATGAGGCTTAACAAGGCTGAGGACATAGACAAACAAGACA
TCTTGTTTCTTTTAGCTGCCAAAATAAATTGTCTCACCTTGAGGTCAAAT
CTCAGGCTAAATGAAGAAAGAGTTTCCTCTTGAACTGTCGGAGAAAATAA
CATTTTTCTAAATGGATCTCTTCAACTTGTTAACCTTGACACATGATCAA
AATTATTACTTAGACAACACATACTCGCACACACACCATATACCATTCAA
ACTCCTTTGTTTTTTGAGAACTGGTTGAGAATAAAAATTTAGATCCCAAA
GAATATCGTGTTGGCAATAGAAGGCTTTAAGGCCCAGTTTATAGAGAGAG
AGCTTGCCCCCCCTATGGATATCTGACATAGACCAAGACGGCTAACATTG
TATATACTGGTGCCTATGAGCCACCCCAAAATAGCTGACATCAGATGTCT
AGGGAACCCAAAGTAAACAGCGATCTAATCTATTCTATAACTAGCTCTGC
CAGACTACCACTGTGCCGGTCTGAATGATAATCGCCCTTTATTCTCATAT
ATTTGAATAACTAGCTACCAGATAGCAGAACTGCTCGGCAAGAATTGCAT
GCCATAATCCTGTCTGAAGATGCTTGTCCTTGTAGAAGAGTTTTGTAATT
TCCCGAGACCAACCCCCATCTCCCCTATTAATAA
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAACGGTAGGTGAA
CTATAGAAGTACCAAAAAAATTCCTGCTGAAGCTTTTGTGCCAATGTGCA
GTGACAGAACTGAAAAATGCTGCCGATGTCCAAAGTGATTGGTAATTACC
AAGCCATTGAATTTTTTATTGTCAATTTATCATTGCGCCAGAGGTTAAAT
TTAACATCTTCTTCTAAAGCCATCACTCTAAGAAGGCCGCCTGCGCGTCA
CGTGGCTCAGAGTCAGCAAAAGGTCAATCAGGTATCTCTTCTGTGTGCAT
GCGCCTCCAAACCCTTTCTTCTCCGGCCTCCTCGGACTGCCTCCTACCCA
GCTGTTAATATTTGCTACTCCCACCCCCCCATCAGATGCTGTCTCACACA
CGCACACGTTTACCCCCACACACTTCTATCTGCATTGGTATTTATTAAGA
ACCCTGGTGTATGAAAAGAATTATTTTCTAAGTAAGAGAAGCTCCATTAT
TTTAAGTTCCTGCCGGTCCTTAAGGTGCAACTAAACGAAGATGTCACTCA
ATCTCTCTCTGTCGCCCTGTCTCTGTCTCTCAGTCTCTCTCTTTGTCTCT
CTACCTCTTTCTCTCTCGTTATAGGCACTAGAAGAACTCGTATGACCCTC
TTTTTAGCAAAATTAAAATCTACCTAGTTCAACGGACTTATATTTCCTTT
TTTCTTCTTTCTTTTCTCTTTTTTTTTTCCCTTTGCACAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_e11.b1 MSMg01no307_e11.b1 CHROMAT_FILE:
MSMg01no307_e11.b1 PHD_FILE: MSMg01no307_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:17 2005
         (248 letters)



>mm_chr2_75112084_75112731
          Length = 648

 Score =  308 bits (159), Expect = 3e-88
 Identities = 183/191 (95%)
 Strand = Plus / Plus

                                                                       
Query: 34  agacatcttgtttcttttagctgccaaaataaattgtctcaccttgaggtcaaatctcag 93
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 234 agacatcttgtttcttttagcggccaaaataaattgtctcaccttgaggtcaaatctcag 293

                                                                       
Query: 94  gctaaatgaagaaagagtttcctcttgaactgtcggagaaaataacatttttctaaatgg 153
           ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||
Sbjct: 294 gctaaatgaagaaagagtttcctcttgaactgtcgaagaaaaaaacagttttctaaatgg 353

                                                                       
Query: 154 atctcttcaacttgttaaccttgacacatgatcaaaattattacttagacaacacatact 213
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || 
Sbjct: 354 atctcttcaacttgttaaccttgacacatgatcaaaattattacttagtcaacacacaca 413

                      
Query: 214 cgcacacacac 224
           | |||||||||
Sbjct: 414 cacacacacac 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no307_e11.g1 MSMg01no307_e11.g1 CHROMAT_FILE:
MSMg01no307_e11.g1 PHD_FILE: MSMg01no307_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:17 2005
         (247 letters)



>mm_chr2_75262994_75263640
          Length = 647

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctgctgaagcttttgtgccaatgtgcagtgacagaactgaaaaatgctgccgatgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 446 attcctgctgaagcttttgtgccaatgtgcagtgacagaactgaaaaatgttgccgatgt 387

                                                                       
Query: 61  ccaaagtgattggtaattaccaagccattgaattttttattgtcaatttatcattgcgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccaaagtgattggtaattaccaagccattgaattttttattgtcaatttatcattgcgcc 327

                                                                       
Query: 121 agaggttaaatttaacatcttcttctaaagccatcactctaagaaggccgcctgcgcgtc 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 326 agaggttaaatttaacatcttcttctaaagccatcactctaagaaggcggcctgcgcgtc 267

                                                                       
Query: 181 acgtggctcagagtcagcaaaaggtcaatcaggtatctcttctgtgtgcatgcgcctcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acgtggctcagagtcagcaaaaggtcaatcaggtatctcttctgtgtgcatgcgcctcca 207

                 
Query: 241 aaccct 246
           ||||||
Sbjct: 206 aaccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)