BAC Information

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BAC

Clone NameMSMg01-307N10
Chromosome2 (Build37)
Map Location 56,273,752 - 56,274,038
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307N10.T7 (MSMg01no307_n10.b1)MSMg01-307N10.TJ (MSMg01no307_n10.g1)
ACCAG432081AG432082
length729730
length of high quality
(start - end)
---287 (73 - 359)
definitionCHROMAT_FILE: MSMg01no307_n10.b1 PHD_FILE: MSMg01no307_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:59 2005CHROMAT_FILE: MSMg01no307_n10.g1 PHD_FILE: MSMg01no307_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCAGAGGAGCCGCGGA
ATTCCCTGATTTTCAAAAACAAACTTTGAACAGGTCAATTAGTCAGATTT
AATTTTTCTTTCACTCTCTTATATTGACATAAATATTTTCATCTGTTATG
CCTAACCTCAAAGTATATTAAACTGTCAAAATATAAATGATTTCCTTTGG
CCACCATGACTTGAGGTATTTATTTCAAGTCTGTTGCGTTACCATATGCC
CCTACGATGTGTAATCTACATTTTCGCGAAATGTGCCTTACTGAAAGACA
CCTGTATTATTTAAGTGTTATTAATATTTGCGCTATGACAGAACGGATCA
CTTTGCCTTACTTTTCTCTTGCACAGACTTATCCATATCTCACAAGAATG
TATCCGGCTGTAATACAACATTCCTCATCCTAATTTGTTTTTCAGCATCG
ACGAATGCGATTGTACATCCAATGTGAATTTTCAGTTATTACTAATACTA
TCATGAATATAATTTACCGGCTACTTCTGCTCGATACTGCTGAGAGCAAC
TGTTAAGACTGAACCCAAAGCAATCTCTTGATAATATAAATTTAAATGTA
TACACTGACGAATCATTTTTAAACCAAACTGTTTACACTATTACACCTAC
TACTTGTTTCTTTAGTGACGATCCCGGAAACTCTTGACTCGTTGCATACC
TATAATACTGACCGAGAGCAATTTGTACA
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTCTGACAGCTTGCTGCCCTAACCAG
GTCCTTGCTTTTCTCTTCTCCCACTATGTCAGGACCCCTGAGACCTAAGT
CCAGGCATCATTAGTCTTGAATAAATCAAAATATGCCTTCAGAAAAAAAA
AAGGCAGAAAAACACAGTCAAAGGCTGTTCCTGTAGGGTGTTTTTAAAAT
TCTAAACTAAGATGGTCTAAATAAAGAGAAAACAAAATAAAATAGCAGCT
TAAAATTTTTGTTGAGATGCTTTGCACATGGATAGTGTTTGCACCCAGAC
AAGGAAGGCTCTGAGGAGATCTGCTTATTACCACCAGATAACATAAAGTA
TAGGTTTTGAGAACTCACCTACAATGGTGGGTACACATTTTTAATGAATT
TCATTATTTTCTGTGGTGCTTCCCCTACTACCAAAGCATTCACCTTATAA
TTCTGTAAAACTGCGTTTAAGCATCACTAGGCTTTGAATAATTATTATCA
CCCATCTATATTACGCAGACTTATTGCCTGCCAATTTTTGTGTTGTTGGC
CAATCCTTAAACTTTAGCACGTAGACCATTCTTATGGTGTATGACACTGG
CCCCCAATAACCAGTTAAGGTTTTTTTTCTTCTGTAATCACGGGTTGATA
TGAATTGGTGGTTACCTTTCTCAAAATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_n10.g1 MSMg01no307_n10.g1 CHROMAT_FILE:
MSMg01no307_n10.g1 PHD_FILE: MSMg01no307_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:00 2005
         (287 letters)



>mm_chr2_56273552_56274238
          Length = 687

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctctgacagcttgctgccctaaccaggtccttgcttttctcttctcccactatgtcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ctctctgacagcttgctgccctaaccaggtccttgcttttctcttcttccactatgtcag 260

                                                                       
Query: 61  gacccctgagacctaagtccaggcatcattagtcttgaataaatcaaaatatgccttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacccctgagacctaagtccaggcatcattagtcttgaataaatcaaaatatgccttcag 320

                                                                       
Query: 121 aaaaaaaaaaggcagaaaaacacagtcaaaggctgttcctgtagggtgtttttaaaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 aaaaaaaaaaggcagaaaaacacagtcaaaggctgttcctgtagggtgtttctaaaattc 380

                                                                       
Query: 181 taaactaagatggtctaaataaagagaaaacaaaataaaatagcagcttaaaatttttgt 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaactaagatggactaaataaagagaaaacaaaataaaatagcagcttaaaatttttgt 440

                                                          
Query: 241 tgagatgctttgcacatggatagtgtttgcacccagacaaggaaggc 287
           ||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagatgcagtgcacatggatagtgtttgcacccagacaaggaaggc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)