Query= MSMg01no307_o02.b1 MSMg01no307_o02.b1 CHROMAT_FILE:
MSMg01no307_o02.b1 PHD_FILE: MSMg01no307_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:03 2005
(685 letters)
>mm_chr2_74192118_74193203
Length = 1086
Score = 1226 bits (634), Expect = 0.0
Identities = 670/682 (98%), Gaps = 1/682 (0%)
Strand = Plus / Minus
Query: 5 gaattccagggttacgtatttagccacattcctgacttttccctgagatatcacattgca 64
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gaattccaggggaaagtatttagccacattcctgacttttccctgagatatcacattgca 827
Query: 65 gacctcgtgttccgcctgagcagcagagcacagaatagtgattgcgatgctgacaaggga 124
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 826 gacctcgtgttcagcctgagcagcagagcacagaatagtgattgcaatgctgacaaggga 767
Query: 125 cgaagaggattatataatgcttgctattgaaaactgcagtgccgagatgccttccatcgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 cgaagaggattatataatgcttgctattgaaaactgcagtgccgagatgccttccatcgg 707
Query: 185 cacagctcccattcccgatgccaagaaagtcaagaggaattcacactcaatgctccagtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cacagctcccattcccgatgccaagaaagtcaagaggaattcacactcaatgctccagtt 647
Query: 245 ggtgcagtgttggataaactgacagatgtcgaagcctcgctgagctacgtgggctgcaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ggtgcagtgttggataaactgacagatgtcgaagcctcgctgagctacgtgggctgcaat 587
Query: 305 caggaccatgtggttctaagaatagggtctctgctctcaaaagtatgtgtgtgcatacac 364
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 586 caggaccatgtggttctaagaatagggtctctgctctcaaaagtatatgtgtgcatacac 527
Query: 365 acatgtactgattgtgtaacagtacagagttatgtctgtgacaaagacagaatggaagga 424
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 526 acatgtactgattgtgtaacagtacagagttatgtctgtgacaaagatagaatggaagga 467
Query: 425 agaatcatcattgtatgtaaaatttcaaacttacacaaagggaagcagcaggaaaattaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 agaatcatcattgtatgtaaaatttcaaacttacacaaagggaagcagcaggaaaattaa 407
Query: 485 ctcccatgttctccccc-aaaccctcacttcttccataaagatccatcctcattctcttt 543
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 406 ctcccatgttctccccccaaaccctcactgcttccataaagatccatcctcattctcttt 347
Query: 544 ggttttgaaatagagtatacataatatatctaaaagtctgtattattttgacaggcagat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ggttttgaaatagagtatacataatatatctaaaagtctgtattattttgacaggcagat 287
Query: 604 ctatacctatataacccacataacaaattttattttagctctccgggtttcactagggat 663
||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 286 ctatacctacataacccacataacaaattttattttagctctctgggtttcgctagggat 227
Query: 664 gtaaaggggttttaattaagag 685
||||||||||||||||||||||
Sbjct: 226 gtaaaggggttttaattaagag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1086
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1076
Effective search space: 726300
Effective search space used: 726300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_o02.g1 MSMg01no307_o02.g1 CHROMAT_FILE:
MSMg01no307_o02.g1 PHD_FILE: MSMg01no307_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:03 2005
(660 letters)
>mm_chr2_74134024_74135089
Length = 1066
Score = 1102 bits (570), Expect = 0.0
Identities = 628/666 (94%), Gaps = 30/666 (4%)
Strand = Plus / Plus
Query: 1 ctggttaaactggacctggtcttggagaatctcctgtgtgtgcctgcaattttgaagagt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 201 ctggttaaactggacctggtcttggagaatctcctgtgtgtgcctggaattctgaagagt 260
Query: 61 cagaatagacaccatcaacctgcctgaagaccaagaatgagcatggggcagatctgggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaatagacaccatcaacctgcctgaagaccaagaatgagcatggggcagatctgggta 320
Query: 121 gttaaacagtaaacccataaaggaggtgaccagtggatcctagaggcactggatcctaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaaacagtaaacccataaaggaggtgaccagtggatcctagaggcactggatcctaga 380
Query: 181 tccaccattgtttcaccctctcccttcctgggctcaatccagccatctcaggcctcctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaccattgtttcaccctctcccttcctgggctcaatccagccatctcaggcctcctaa 440
Query: 241 cagtgcaatgtcatgttaggggg------aatctaatatcacagagcctttccagagcgt 294
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 cagtgcaatgtcatgttagggggtatgggaatctaatatcacagagcctttccagagcgc 500
Query: 295 actgcttttgaggacagcaccagcaaagatggctcagaattttcacttgaggactaagtc 354
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgcttttggggacagcgccagcaaagatggctcagaattttcacttgaggactaagtc 560
Query: 355 agccacgttaccagctctgatgttcttatgggaaagaaagaaagaaagaaagaaagaaag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccacgttaccagctctgatgttcttatgggaaagaaagaaagaaagaaagaaagaaag 620
Query: 415 aaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaag 474
|||||||||||||||||||| ||||||||||||||||
Sbjct: 621 aaagaaagaaagaaagaaag------------------------gaaggaaggaaggaag 656
Query: 475 gaaggaaggaaggaaggaaggaaggaaggaaggaaggaaaccgaaaaccgttggagtctt 534
||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 657 gaaggaaggaaggaaggaaggcaggcaggcaggaaggaaaccgaaaaccgttggagtctt 716
Query: 535 tcaaagtcctaaacaatgactctagctgtttaataaaagggttggtttaaaaagaaaaac 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tcaaagtcctaaacaatgactctagctgtttaataaaagggttggtttaaaaagaaaaac 776
Query: 595 aaatcaggttgagtgcaagattggtgacttttatttttaacaagctggattcttgtgggg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aaatcaggttgagtgcaagattggtgacttttatttttaacaagctggattcttgtgggg 836
Query: 655 ttctct 660
||||||
Sbjct: 837 ttctct 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1066
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1056
Effective search space: 686400
Effective search space used: 686400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
