Query= MSMg01no308_g06.b1 MSMg01no308_g06.b1 CHROMAT_FILE:
MSMg01no308_g06.b1 PHD_FILE: MSMg01no308_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:42 2005
(592 letters)
>mm_chr2_42381156_42382142
Length = 987
Score = 874 bits (452), Expect = 0.0
Identities = 552/598 (92%), Gaps = 31/598 (5%)
Strand = Plus / Plus
Query: 6 aattctcacatg--tacccactacatattctagacacttactctccttccagtatcactg 63
|||||||||||| | |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 206 aattctcacatggat---cactacatattctagacactgactctccttccagtatcactg 262
Query: 64 aagttggagagtaactagaataataaaataattactgtatgttttggccactttcactat 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 263 aagttggagagtaattagaataataaaataattactgtatgttttggccactt----tat 318
Query: 124 tgattttatatttttccatatatgga---aaatattta-atatat-tatat-tataaata 177
||||||||||||||||||||||| | | |||| || |||||| ||||| |||| |||
Sbjct: 319 tgattttatatttttccatatat--atatatatatatatatatatatatatatatatata 376
Query: 178 tata-atatatattatacaaacacacagatatataaatataaatatatataaatatataa 236
|||| ||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 377 tatatatatatattatacaaacacacagatatataa----------atataaatacataa 426
Query: 237 aaatagaaatcatattatatagatgttgttgactacatatttttaaatataaacatatat 296
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaatataaatcacattatatagatgttgttgactacatatttttaaatataaacatatat 486
Query: 297 tctaatgagtacatctagatgaatattgaaaataacttataagcatgtatagatgtataa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tctaatgagtacatctagatgaatattgaaaataacttataagcatgtatagatgtataa 546
Query: 357 atgtatatgtgtatatacacacatttcatgcaaacaacaggaactctgtgtgtataaatg 416
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atgtatatgtgtatatata-atatttcatgcaaacaacaggaactctgtgtgtataaatg 605
Query: 417 cc--atatgtgtgtgtgtgtgtgtgtatacatctttatgtaaaatttgatagagctttag 474
|| |||| | |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 606 ccatatatatatgtgtgtgtgtgtgtatacatctttatgtaaattttgatagagctttag 665
Query: 475 atttactatatagtttactagaatctagaaggctattccctaagagtgtttcaagttgtt 534
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 666 atttactatatagtttactagaatctacaaggctattccctaagagtgtttcaagttgtt 725
Query: 535 gcaattattccatatatgtatatttttgaaatgtctaaagatatgtgtttctcataac 592
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 726 gcaattattccatatatgtatattttcgaaatgtctaaagatatgtgtttctcataac 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 987
Length adjustment: 10
Effective length of query: 582
Effective length of database: 977
Effective search space: 568614
Effective search space used: 568614
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_g06.g1 MSMg01no308_g06.g1 CHROMAT_FILE:
MSMg01no308_g06.g1 PHD_FILE: MSMg01no308_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:42 2005
(244 letters)
>mm_chr2_42453696_42454339
Length = 644
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%)
Strand = Plus / Minus
Query: 1 cttgcagagaaagatttgtgaaatccagcagggaaccaaggatactgcactcccaaacac 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 444 cttgcagagaaagatttgtgaaatccagcagggaaccaaggaaactgcactcccaaacac 385
Query: 61 actcctgccgagaaggcgttatcattgcttctctcttagcatttcaaaaaatcttcaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actcctgccgagaaggcgttatcattgcttctctcttagcatttcaaaaaatcttcaagc 325
Query: 121 ctgtgagtcaaaagcacttctgttttatatactgatctccagcaaatattttgaaaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgtgagtcaaaagcacttctgttttatatactgatctccagcaaatattttgaaaaaaa 265
Query: 181 atggacagctattttatacttggaagagtggttctattcctaataaaaggcagtttatct 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 atggacagctattttatacttggaagagtggttctattcccaataaaaggcagtttatct 205
Query: 241 tcat 244
||||
Sbjct: 204 tcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
