Query= MSMg01no308_i03.b1 MSMg01no308_i03.b1 CHROMAT_FILE:
MSMg01no308_i03.b1 PHD_FILE: MSMg01no308_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:50 2005
(640 letters)
>mm_chr2_55705737_55706781
Length = 1045
Score = 1106 bits (572), Expect = 0.0
Identities = 624/646 (96%), Gaps = 10/646 (1%)
Strand = Plus / Plus
Query: 5 gaattcactgggctcctgggaggtcccagacattgcagttatttgggtgcatgtcttaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattcactgggctcctgggaggtcccagacattgcagttatttgggtgcatgtcttaac 259
Query: 65 tgctgccctggctgcagcagatctcctttgagacttgtggtgttgaaagagaggggcaga 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 260 tgctgccctggctgcagcagatctcctttgagacttgtggtgttgatagagaggggcaga 319
Query: 125 aaaaa-tgatctgccttagcacatttgcagaatggaagggaaattggtgaataataaact 183
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 320 aaaaaatgatctgccttagcacatttgcagaatggaagggaaattggtgcataataaact 379
Query: 184 tatatcttctgtcctctgacttgatctattacaatcctgactaaagttac----atacat 239
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 380 tatatcttctgtcctctgacttgatttattacaatcctgactaaagttacgtacatacat 439
Query: 240 acatacatacatacatattcaaaagcaggtagatacattcatacaattatagccgaacac 299
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 440 acatacatacatacatattgaaaagcaggtagatacattcatacaattatagccaaacac 499
Query: 300 atttcaatgtattgcattttatttttgttgcaaattcagtaatgtgtgtctgtggagatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atttcaatgtattgcattttatttttgttgcaaattcagtaatgtgtgtctgtggagatg 559
Query: 360 aataactagattaacgcacttact-----agcatgggaactacaattttcactgccacca 414
|||||||||||||| | ||||||| |||||||||||||||||||||||||||||||
Sbjct: 560 aataactagattaatgtacttactgcactagcatgggaactacaattttcactgccacca 619
Query: 415 cccatgtaaagtttgaacagacacgctgaacatgtatattattaaccataggcagagata 474
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 620 cccatgtaaagtttgaacagacacgctgaacacctatattattaaccataggcagagata 679
Query: 475 tgggatttacaaaataaaatggctagctagattattcagaatagatgaacttctttttca 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgggatttacaaaataaaatggctagctagattattcagaatagatgaacttctttttca 739
Query: 535 gcaaaagactctgtctcaataaatgagactgtagaacaatcaacaagaaaaacatctata 594
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 740 gcaaaagactctgtctcaataaatgagactgtagaacaatcaatgagaaaaacatctata 799
Query: 595 aactgtataatacataaatagatatatggctagttctagaacttaa 640
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aactctataatacataaatagatatatggctagttctagaacttaa 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1045
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1035
Effective search space: 652050
Effective search space used: 652050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_i03.g1 MSMg01no308_i03.g1 CHROMAT_FILE:
MSMg01no308_i03.g1 PHD_FILE: MSMg01no308_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:50 2005
(344 letters)
>mm_chr2_55874888_55875631
Length = 744
Score = 634 bits (328), Expect = 0.0
Identities = 340/344 (98%)
Strand = Plus / Minus
Query: 1 tttaaaagtgatatgactaattaggtgacattctgcctttaggtctatacttcaaatgtt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 706 tttaaaagtgatatgactaattaggtgacattctgcctttaagtctatacttcaaatgtt 647
Query: 61 ctgtataactactcagtgttcattaattgctacctactttcagtgattcatttttaaaca 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 646 ctgtataactactcagtgttcattaattcctacctactttcagtgattcatttttaaaca 587
Query: 121 aatatttcaaacaaacctagagtacatttttaattgccttaagatgtaaaatacaaatgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 586 aatatttcaaacaaacctagagtacatttttaattgccttaagatgtaaaatacaaatct 527
Query: 181 gagtgacttactggaagaaacactcaaagtttattttcaatcttttatttgaaaggtagc 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 526 gagtgacttactggaagaaacactcaaagtttatttttaatcttttatttgaaaggtagc 467
Query: 241 aaggaagtgaatcagggattaaaatatagaaagccactttatgcagttcaatatgatccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aaggaagtgaatcagggattaaaatatagaaagccactttatgcagttcaatatgatccc 407
Query: 301 aagagctagataccagagattatgaatgtgtctcaggagaaaag 344
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aagagctagataccagagattatgaatgtgtctcaggagaaaag 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
