Query= MSMg01no308_k16.b1 MSMg01no308_k16.b1 CHROMAT_FILE:
MSMg01no308_k16.b1 PHD_FILE: MSMg01no308_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:03 2005
(562 letters)
>mm_chr2_149181305_149182266
Length = 962
Score = 942 bits (487), Expect = 0.0
Identities = 537/567 (94%), Gaps = 23/567 (4%)
Strand = Plus / Minus
Query: 5 gaattctactgaatgccccgatgagtacagcttaagatattgatcttcatttgagtctac 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattctactgaatgcaatgatgagtacagcttaagatattgatcttcatttgagtctac 510
Query: 65 tgtgagattacttgcagtataataattacacctcagtaccatatttgaaatctgggatag 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgtgagattacttgtagtataataattacacctcagtaccatatttgaaatctgggatag 450
Query: 125 tctgtagtcactgatgccatttagaacctagagaaagtagcacaaattatcaatctgtaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tctgtagtcactgatgccatttagaacctagagaaagtagcacaaattatcaatctgtaa 390
Query: 185 ctttcagataaccaatgaggcaactgaagctttctatacattcatgtaggaaaggtctca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 389 ctttcagataaccaatgaggcaactgaagctttctatacattcatgtaggaaaagtctca 330
Query: 245 gtgtcgagtagaaacacgactagccattcccatatttcaccttcacctgcctccaagcta 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtgtcgagtagaaacatgactagccattcccatatttcaccttcacctgcctccaagcta 270
Query: 305 aaagctgaaagcaccagacaacccatttcctggctatagacatgcatgatataccctgag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaagctgaaagcaccagacaacccatttcctggctatagacatgcatgatataccctgag 210
Query: 365 acatg---------cccccccccgactatattgagtaacaatgtgacacagggaaaatct 415
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 209 acatgtaagaaagt---------gactatattgagtaacaatgtgacacagggaaaatct 159
Query: 416 ctttctgcttatttacatcaatttttgcttctcctttgaaattttattgattcttttctt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ctttctgcttatttacatcaatttttgcttctcctttgaaattttattgattcttttctt 99
Query: 476 cacaacattcatgccaatcccacttatctccccttcccttcatatctaccctcgcaacat 535
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 98 cacatcattcatgccaatcccacttatctccccttcccttcatat-----ctcgcaacat 44
Query: 536 ccctccccaaaataaaataaaaataaa 562
|||||||||||||||||||||||||||
Sbjct: 43 ccctccccaaaataaaataaaaataaa 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_k16.g1 MSMg01no308_k16.g1 CHROMAT_FILE:
MSMg01no308_k16.g1 PHD_FILE: MSMg01no308_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:03 2005
(288 letters)
>mm_chr2_149083913_149084600
Length = 688
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%)
Strand = Plus / Plus
Query: 1 ccatgcaatattccagctgacacactgctccttactcactgctgatatacactaaagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatgcaatattccagctgacacactgctccttactcactgctgatatacactaaagaaa 260
Query: 61 acttccaaaattgtttgttatttctacactgtccttatagcttaatttttaaaatatact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttccaaaattgtttgttatttctacactgtccttatagcttaatttttaaaatatact 320
Query: 121 ttgagttgttttcatatcctagatattgataaaggatccagcacactgtgccaaacaccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgagttgttttcatatcctagatattgataaaggatccagcacactgtgccaaacaccg 380
Query: 181 atttgcccctagattgggttatgtccaccaatgaattgcatgggcaatatctggagcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgcccctagattgggttatgtccaccaatgaattgcatgggcaatatctggagcctg 440
Query: 241 ctctgtttttatatgtgctttgtgaggtcctgaagtaaaagatcat 286
||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgttttgaaatgtgctttgtgaggtcctgaagtaaaagatcat 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
