Query= MSMg01no308_l12.b1 MSMg01no308_l12.b1 CHROMAT_FILE:
MSMg01no308_l12.b1 PHD_FILE: MSMg01no308_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:07 2005
(238 letters)
>mm_chr2_172779719_172780356
Length = 638
Score = 424 bits (219), Expect = e-123
Identities = 232/237 (97%), Gaps = 2/237 (0%)
Strand = Plus / Plus
Query: 2 gggggtgtcttcatgggtagctcacggactgtcttgatactcccactctactagcacaga 61
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 202 gggggtgtcttcatgggtagctcagggactgtcttgatactcccactctactagcacaga 261
Query: 62 aagttctaccctaagccccacaagcctgtagcagctgacatctgcacagagggagagaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aagttctaccctaagccccacaagcctgtagcagctgacatctgcacagagggagagaaa 321
Query: 122 tgaccacagttgtgacacacagaaaagaatgcaggaaaaaaaaaaaaa--catagcatct 179
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 322 tgaccacagttgtgacacacagaaaagaatgcaggaaaaaaaaaaaaaaacatagcatct 381
Query: 180 tagttagggtctctattgttgtgataaaacaccatgaccaaaaccaacttgggaatg 236
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 382 tagttagggtctctattgctgtgataaaacaccatgaccaaaagcaacttgggaatg 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no308_l12.g1 MSMg01no308_l12.g1 CHROMAT_FILE:
MSMg01no308_l12.g1 PHD_FILE: MSMg01no308_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:07 2005
(233 letters)
>mm_chr2_172946823_172947453
Length = 631
Score = 275 bits (142), Expect = 2e-78
Identities = 225/288 (78%), Gaps = 56/288 (19%)
Strand = Plus / Minus
Query: 1 tttagcactttaggccagcctgggctacatgagatgctgtctcaaaacaacaagctgagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tttagcactttaggccagcctgggctacatgagatgctgtctcaaaacaacaagctgagt 557
Query: 61 gagctacagagttccaggatttccagcctgggctacaca--------------------- 99
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 556 gagctacagagttccaggctttccagcctgggctacacacacacacagagagagagagag 497
Query: 100 ---------------------gagagagagagagagagatagcagtgaggtttttaattg 138
|||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agagagagagagagagagagagagagagagagagagagatagcagtgaggtttttaattg 437
Query: 139 atttttttt--aat------------gtcctacatcaatctaaaatatatatcctgagaa 184
|||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 436 tttttttttttaatttttttttttttgtcctacatcaatctaaaatatatatcctgagaa 377
Query: 185 aatcttctatattttaaattactcatgaagatactgggtaggtagtta 232
||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 376 aatcttctagatgcaaaattactcatgaagatactgggcaggtagtta 329
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 631
Length adjustment: 9
Effective length of query: 224
Effective length of database: 622
Effective search space: 139328
Effective search space used: 139328
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
