BAC Information

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BAC

Clone NameMSMg01-308M12
Chromosome2 (Build37)
Map Location 172,779,870 - 172,780,025
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7
Downstream geneLOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308M12.T7 (MSMg01no308_m12.b1)MSMg01-308M12.TJ (MSMg01no308_m12.g1)
ACCAG432760AG432761
length717723
length of high quality
(start - end)
156 (51 - 206)245 (58 - 302)
definitionCHROMAT_FILE: MSMg01no308_m12.b1 PHD_FILE: MSMg01no308_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:11 2005CHROMAT_FILE: MSMg01no308_m12.g1 PHD_FILE: MSMg01no308_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATACCAATCGGCACCGAGCCGCGGAATTCTTGCTTGGCCCCACCCTTGGN
CTTCCCTTTGTCAGAGCAGGTCACATGGCCATCTGTGTATGTGCCCGTGT
GGGGGTGTCTTCATGGGTAGCTCAGGGACTGTCTTGATACTCCCACTCTA
CTAGCACAGAAAGTTCTACCCTAAGCCCCACAAGCCTGTAGCAGCTGACA
TCTGCACAGAGGGAGAGAAATGATTTTGTTGTGACACACTTAAAATAATG
CAGGAAAAAAAAAAAAACATAGCATCTTAGCCAGGGTTTTCATCGTTTTG
ACCACCCACCATGATCAAAAGCAACTTGTTTTTTTTTTACCCCCCCCAGC
CGACATTTGACTGTTCATCACTGAAGGAAAGTCACCCCCACCTTCTTAAA
GGACAAGAACACTGAGTTCTTTATTCATATAAGTCACTTACCCATCAATC
TGTACTACCACGAACTCAATTTTAGCCTTATTTCCTAACCTGCTTCTTAA
ACTTCATACCTTTTTCCGCTTTCGGTNCTACGGACTCTTATTATATACCA
CTAATTTAATTTTTGTTTGTCCTTCTTTCTTCTACTGCTCCCCCCGCCTT
TTTTTTTTTTTTTACTCTTGGCTCGTTTTTTTCTTTTTCTTTTCATTTTC
AACTCCATTTTGTGAATCCACTTATTTCATTTTTTTTGTAACAATCCTAT
TTATGCTTTCCCTCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGGCTAGTTTGAACTACATAGCAATCCCAGAACCAGGGAGAT
TGAAGTAGGATTTAGCACTTTAGGCCAGCCTGGGCTACATGAGATGCTGT
CTCAAAACAACAAGCTGAGTGAGCTACAGAGTTCCAGGATTTCCAGCCTG
GGCTACACAGAGAGAGAGAGAGAGAGATAGCAGTGAGGTTTTTAATTGAT
TTTTTTTAATGTCCTACATCAATCTAAAATATATATCCTGAGAAAATCTT
CTATATGTTCAAATTACTCATGAAGATACTGGGCAGGCAGTTATAATCCT
ATTCCCCCCCCCCCCCCCCTGAAGTGATTTTTTAAAAAGATATTATTTCA
CCCCCCCCTTTCAACAAATCAAGGAGGTGGAGAGGAGCCCAACTTGCAGA
ACTTCATGATGATCCCGATGCCAAAGCCCATTATTCTTGCGATACAGTTC
AGAATTATCTCCCAGAATGCCAAGGTAATAATTCCCGATAACTTACCCTT
CCCCCTGTACCAATTCTCCCACCTAACTCCTGCAGCCATTCCCATTCTGT
CTGATTTTCGCCCCCCCATAACGAGCTCATTTTGTCCCCCCCCGCAGTTT
TTTTTATTATTGCCCCCCCCTTCCTCCCCCCTTGCTTCGCCTGCTATTCC
TATATTTTGTTTCCCCTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_m12.b1 MSMg01no308_m12.b1 CHROMAT_FILE:
MSMg01no308_m12.b1 PHD_FILE: MSMg01no308_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:11 2005
         (156 letters)



>mm_chr2_172779670_172780225
          Length = 556

 Score =  275 bits (142), Expect = 1e-78
 Identities = 153/158 (96%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccctttgtcagagcaggtcacatggccatctgtgtatgtgcccgtgt--gggggtgt 58
           |||||||||||||||||||||||||||||||||||||||||||   ||||  ||||||||
Sbjct: 201 cttccctttgtcagagcaggtcacatggccatctgtgtatgtg--tgtgtgggggggtgt 258

                                                                       
Query: 59  cttcatgggtagctcagggactgtcttgatactcccactctactagcacagaaagttcta 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cttcatgggtagctcagggactgtcttgatactcccactctactagcacagaaagttcta 318

                                                 
Query: 119 ccctaagccccacaagcctgtagcagctgacatctgca 156
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccctaagccccacaagcctgtagcagctgacatctgca 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)