BAC Information

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BAC

Clone NameMSMg01-308N21
Chromosome2 (Build37)
Map Location 18,348,759 - 18,349,042
singlet/doubletsinglet
Overlap genenone
Upstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388, LOC623325
Downstream geneLOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521, Armc3, Msrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308N21.T7 (MSMg01no308_n21.b1)MSMg01-308N21.TJ (MSMg01no308_n21.g1)
ACCAG432822AG432823
length717713
length of high quality
(start - end)
283 (435 - 717)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no308_n21.b1 PHD_FILE: MSMg01no308_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:18 2005CHROMAT_FILE: MSMg01no308_n21.g1 PHD_FILE: MSMg01no308_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACTACAGTCGCTGTTTTTAACGTGCAGAAATTTAATACCAATGTA
AAAATATTGTTCTCTGTCTTACCCCCTTGAGATAAGGTCTCTCACTGAAC
CTGAACTTTGCTGTTTTGGTTAAGCTGACTAGTCAGGGGGCTCCCGGATT
TGCCAGTCTGTGTTTCCTGGTGCTGGGATTATAGGATATGTTGAGCCGTT
GTAGCTTTCTGTGGTCAGGCACTGGGGATTTGAACTCAGATCCTCACACT
TGCCTAGCAAGCACATTTACACACTGGACCATCTTCCCAGCCCCAAGGAT
ATGTTTTTCACTGTTGATCTCCACCACCCCCACCTGAATCCAAACAATAC
TATCCCACAACCCCTCACCAACGCATGCTAGAATTATATTTACTTTTTCT
TTAGAAGCAAGCCACTTGGCACAAAGCACTTGTCCCACCAGGTCAGGGAT
GCCTGGAGGCAAGCATCCCAGAAAGCCATTCTAGAGGCTATATGCCACAT
CTACCTGGAATGCCACCGAGAGGTGGATTTCAGTTGGCTCATGTCAGTAT
AACCAATAAAAACAGCAGGGCTATAAAGCTCTCGGACAGAATGTTTGCCT
CACGTCAAAGTGGCCCTGGGTTCAAACGCACCCCCAACTCCATCTTCAGA
GCACCTCACAGACTTAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTTCTGCCTAGATGCTACCAT
ACACCCTGATGATAATGGCCTGAACCACTGAACCTGTAAGCTAGCCCCAA
TTAAATGTTGTCCTTAATAAGCCTTGCATTGGTCATGGTGTCTGTTCACA
GCAGTAAAACCCTAAGACAGAAGTTGGTACCAGTCCCTGTACCAACTATT
GCTGTGATAAGCCTAACCAAGCTTTTGTTTGGAAGAATGTGGATTTTGGG
TCTTTGGATTTGGAATGTGGTGGAATGCTTTAAGTGAGGCTTAATGGGCT
ATCCTAGTAGTATTATGATTCACCCCCCCTCCCACCGTGATTTGAACTGA
GAAAACCTAGTTTTAGAGGTTTCAAAGAAGAAGAATTTCAGTATGTGGCC
GAGTGACTGTTCTTGTAATATTTTGGTGAACAATGTGGCTGCTGTTTGCC
ATTGTCCAAAGACTACCTGAGGTTAAGGAGTAGAGACTCCTATTAATTGC
ATCGACAAAGGAAGTCTCTAAACACCCATCATAGACTTTGTTCTCTGGTT
AAGTCTCATGAAGAACATTTTANACAAGCATAGTAAGCTGAGAATGGAAA
AATATAAAATATATGGTTTGTGTATTAAAGGGGCACTAGTAGGAGAAATG
AAGCTACATCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_n21.b1 MSMg01no308_n21.b1 CHROMAT_FILE:
MSMg01no308_n21.b1 PHD_FILE: MSMg01no308_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:18 2005
         (283 letters)



>mm_chr2_18348559_18349242
          Length = 684

 Score =  495 bits (256), Expect = e-144
 Identities = 277/284 (97%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatttactttttcttt-agaagcaagccacttggcacaaagcacttgtcccaccaggt 59
           |||||| ||||||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 484 tatattcactttttctttaaaaagcaagccacttggcacaaagcatttgtcccaccaggt 425

                                                                       
Query: 60  cagggatgcctggaggcaagcatcccagaaagccattctagaggctatatgccacatcta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cagggatgcctggaggcaagcatcccagaaagccattctagaggctatatgccacatcta 365

                                                                       
Query: 120 cctggaatgccaccgagaggtggatttcagttggctcatgtcagtataaccaataaaaac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cctggaatgccaccgagaggtggatttcagttggctcatgtcagtataaccaataaaaac 305

                                                                       
Query: 180 agcagggctataaagctctcggacagaatgtttgcctcacgtcaaagtggccctgggttc 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agcagggatataaagctctcggacagaatgtttgcctcacgtcaaagtggccctgggttc 245

                                                       
Query: 240 aaacgcacccccaactccatcttcagagcacctcacagacttac 283
           |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 244 aaacccacccccaactccatcttcagagcacctcacaggcttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space:   184950
Effective search space used:   184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)