BAC Information

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BAC

Clone NameMSMg01-309D15
Chromosome2 (Build37)
Map Location 39,816,939 - 39,817,220
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309D15.T7 (MSMg01no309_d15.b1)MSMg01-309D15.TJ (MSMg01no309_d15.g1)
ACCAG433077AG433078
length740725
length of high quality
(start - end)
316 (45 - 360)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no309_d15.b1 PHD_FILE: MSMg01no309_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:45 2005CHROMAT_FILE: MSMg01no309_d15.g1 PHD_FILE: MSMg01no309_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:45 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCTTTCTATGACTTTTACCATGAAGGGGTTTTGTATTTTGTC
AAATGCTTTCTCAGCCTCTAATATGATGATCATGTGTTTTTTTTTCCTTT
GAGTGTGTTTATATCATGGATTACTTTGATGGATTTCCTTATATTGAACC
ATCCCTGCATTCCTGGAATAAAGCCTACTTGATCATGATGGATAATTGTT
TTAATCTATTCTTGGATTTTGTTTATGAGAATTTTATTATTTTTCATCAA
TATTCATAAGTGAGATTGGTCTGAAGTTCTCTTGCTTTGTTGAGTCTTTG
TGTAGTTTATTTATTTTTGTAATCCCCCCCCCCTAGAACGAATTGGGTAG
TGTTCCTTCTGTTTCCATTTTGTCAAAAAGAAAGAAAAGAGTAGGTACGA
GGTCTTCTTTGAAGGTATGATAAAATTTGTCCTAAAACCATCTTGTCCTG
GCCTTGTTCTGACTAGGAGACTTTTAATGACTGCTGCTATTTCTTTAGGG
CTTATGGCACCGTTTATACGGTCTATTTGAACCTGATCTAATTTTATTAC
TTGGTATCCGTCTAAAAAATTTTCCCTTTCATTCCGATTTTCTTATTTTG
TTTTAATATCAATCTTTTGTATTACGAAGCGCTTCATTTTTTCAATTATC
TCCCTTTTTTTTGTTTCATCCCACCTTATCATTTTCTTCT
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTGCATCTAATCCAACTTTCAG
GACTTAATAAACAGATAAAACTGTGACAGCTATCAAAATTGAAAGATATA
TATGTATGTATGTATGTATATGTGTATACATATACATATACACATATACA
TACATACATATGTGTCTGTATATATATTTGCTGTGTGGCAAAAAGGAGGA
GGAAAGGGAGAATCTTGTTAAAAGTTTAAAATGAGAACATAGCTGCATTA
TGACAGATGTCCCCCACTGAGATGCTGATTGTGAGAGATGACATATCACC
CAAACCAAGGTTAATGTTTTGTTTCTCCCCTTCAGCCCCGTGGCAGTGAG
AATGGCTGCTGAAGAAGAGAATGTCTGTGAGAAAACAACAAAAGAGCTCA
GTAGTTGGGCTGTATGTCTCCACGTGTGGAACCAGGTCTGGGTTCTCCAG
ATGCTGAGAAGTAGAAGTGAAACAGCTTCTCCCTCTTTCGTGAGGTGCTT
GTACTTTCCTCCCTTGTTGAGTCTCTGTGGAGTCTGTAAGGCGAGGCTAA
ACACTTTGACTCAATGTACTATGTAAAAACTTCTTGTGAAATCTTTTGAA
GCATAAACCCATCAGATGTGTGTTACTTACTACTTTAGTATTCCGTTTAG
CAAATTGGCTAAACTCTATCGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_d15.g1 MSMg01no309_d15.g1 CHROMAT_FILE:
MSMg01no309_d15.g1 PHD_FILE: MSMg01no309_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:45 2005
         (289 letters)



>mm_chr2_39816585_39817273
          Length = 689

 Score =  456 bits (236), Expect = e-133
 Identities = 273/290 (94%), Gaps = 9/290 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattgcatctaatccaactttcaggacttaataaacagataaaactgtgacagctatcaa 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 636 tattgcatctaatccaactttcaggacttaagaaacagataaaactgtgacagctatcaa 577

                                                                       
Query: 61  aattgaaagatatatatgtatgtatgtatgtatatgtgtatacatatacatatacacata 120
           ||||||||||||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aattgaaagatata--------tatgtatgtatatgtgtatacatatacatatacacata 525

                                                                       
Query: 121 tacatacatacatatgtgtctgtata-tatatttgctgtgtggcaaaaaggaggaggaaa 179
           ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 524 tacatacatacatatgtgtttgtatattatatttgctgtgtggcaaaaaggaggaggaaa 465

                                                                       
Query: 180 gggagaatcttgttaaaagtttaaaatgagaacatagctgcattatgacagatgtccccc 239
            ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 464 aggagaatcttgttaaaagtttaaaatgagaatatagctgaattatgacagatgtccccc 405

                                                             
Query: 240 actgagatgctgattgtgagagatgacatatcacccaaaccaaggttaat 289
           |||||||||||||  |||||||||||||||||||||||| ||||||||||
Sbjct: 404 actgagatgctgaaagtgagagatgacatatcacccaaaacaaggttaat 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)