BAC Information

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BAC

Clone NameMSMg01-309F16
Chromosome2 (Build37)
Map Location 80,869,448 - 80,870,065
singlet/doubletsinglet
Overlap genenone
Upstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309F16.T7 (MSMg01no309_f16.b1)MSMg01-309F16.TJ (MSMg01no309_f16.g1)
ACCAG433166AG433167
length848723
length of high quality
(start - end)
---621 (77 - 697)
definitionCHROMAT_FILE: MSMg01no309_f16.b1 PHD_FILE: MSMg01no309_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:55 2005CHROMAT_FILE: MSMg01no309_f16.g1 PHD_FILE: MSMg01no309_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXACACCTGAGGAATACATATTGCCCAACAAGCACCTGAA
AAAAAGTTCCACATCCTTAATCCTCGTTTCACCGTAAATCACAGCTAACC
TCGATATTCCACCTCTCACCAGTCAAAATGCCTAACACTCTCAGTTCAAT
GAACACCACAGGCCGTCATGCATGTCGAAAACGAGAAACACTCCTCCTCC
TTTGTTGNTGCAACTGCATTCTTGTACAACCATTCTGTAAATCATTCTGA
TGATCCCTCAAATCCTTNNACCTAACACTACTGTATGATTCCCCCACACC
TCCCTGAATAATTANNTTATACATCGATTTCCCCCCCCCCCCCCCCCATT
GTNNNNNNTTTTTTTTTTTCNCTTTNCNNNCNTTTTATAAAATCCATTAA
AAAAATCGGGGGCCCGCTGGGGAGTTACAATTTNNTNCNCTNNNTCNTNT
NTTTTCTCCCTCCCTTCATCCTAACCCCCTCCATTCCCTTTTTTCCTCCC
CTCTTTATTTTTTNATTATTCTCCCCCTCCCCTTTCCTTTTCTTTTTTCT
CATCTCCCTCTCCCACCATATTCTCATCTCCAATCAATACCACCTCCCCT
ATANTTCCCCTATCCTTCTTATAAATATTTATAATACCTTCACATTCCTC
CTCTCTCCCCCCTTCCTCCCTCCCCTCTTTCTTTTCACATCATTCTATTA
TATATAAATTCTATCTCTTTATTTATCCCTTTCCCCATAACTCCCGCGGG
GGGGGGGGGGGGGAGGGGTATGTCCTTAANTTTTTNTGACCCTCTCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGCTTGTTTTTGATGAGTG
ATGTTGTTTTCTTTTATGACGTTCAGAAAAGTTTATTTGTAAGGGATAAA
CATGGTACAAGTAGATGAAAACTAGAAGTGTTTTCTTATTTTTTTTCTTT
AGTTCAAGGTTTTCTATGTAGCCCAGCCTGTTCCTGAATGTAAAATCTTC
TGTCTCAGCCCCTTAGGTACCTGTATTCATAGCTTCTCTCTGTCAACACC
TGGCTATTATCTCCTTTGGCATTCAGATATGAATCTAGGTATTTAGTGTT
GGATTTTGAAAGTTGGTAAATGCCTTAAAGAATATAGCATTAACTCTTTG
GTCTTCCTACAACCACCAAAACTAGACACTATTGTGGAAGCCAATAATAG
CTTGCTGACAGGAGCCTGATATAGCTGTCTACTGAGAGGCTCTACCAGTG
CCTGACAAATACAGAAGTGGATGCTCACAGCCATCCATTGGATGGAGCAC
AGGGTCCACAATGAAGGAGCTAGAGGAAGTACCCAAGGAGCTGAAGGGGT
TTTCAGTCCCATAGGAGGAACAATATGAACTAACTGGAATCTCCAGAGCT
CCCTGGGACTAAACTACCAACCAAAGAAAACACATGGTGAGACTCATGGC
TTTAGCTGCATATGTAACAGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_f16.g1 MSMg01no309_f16.g1 CHROMAT_FILE:
MSMg01no309_f16.g1 PHD_FILE: MSMg01no309_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:55 2005
         (621 letters)



>mm_chr2_80869248_80870268
          Length = 1021

 Score = 1170 bits (605), Expect = 0.0
 Identities = 616/621 (99%), Gaps = 3/621 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcaggcttgtttttgatgagtgatgttgttttcttttatgacgttcagaaaagtttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcaggcttgtttttgatgagtgatgttgttttcttttatgacgttcagaaaagtttat 260

                                                                       
Query: 61  ttgtaagggataaacatggtacaagtagatgaaaactagaagtgttttcttatttttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaagggataaacatggtacaagtagatgaaaactagaagtgttttcttatttttttt 320

                                                                       
Query: 121 ctttagttcaaggttttctatgtagcccagcctgttcctgaatgtaaaatcttctgtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 321 ctttagttcaaggttttctatgtagcccagcctgttcctgaatgtaaaatct---gtctc 377

                                                                       
Query: 181 agccccttaggtacctgtattcatagcttctctctgtcaacacctggctattatctcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agccccttaggtacctgtattcatagcttctctctgtcaacacctggctattatctcctt 437

                                                                       
Query: 241 tggcattcagatatgaatctaggtatttagtgttggattttgaaagttggtaaatgcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 438 tggcattcagatatgaatctaggtatttagtgttggattttgaaagttggtaaatacctt 497

                                                                       
Query: 301 aaagaatatagcattaactctttggtcttcctacaaccaccaaaactagacactattgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaagaatatagcattaactctttggtcttcctacaaccaccaaaactagacactattgtg 557

                                                                       
Query: 361 gaagccaataatagcttgctgacaggagcctgatatagctgtctactgagaggctctacc 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 558 gaagccaataatagcttgctgacaggagcctgatatagctgtctcctgagaggctctacc 617

                                                                       
Query: 421 agtgcctgacaaatacagaagtggatgctcacagccatccattggatggagcacagggtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agtgcctgacaaatacagaagtggatgctcacagccatccattggatggagcacagggtc 677

                                                                       
Query: 481 cacaatgaaggagctagaggaagtacccaaggagctgaaggggttttcagtcccatagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cacaatgaaggagctagaggaagtacccaaggagctgaaggggttttcagtcccatagga 737

                                                                       
Query: 541 ggaacaatatgaactaactggaatctccagagctccctgggactaaactaccaaccaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggaacaatatgaactaactggaatctccagagctccctgggactaaactaccaaccaaag 797

                                
Query: 601 aaaacacatggtgagactcat 621
           |||||||||||||||||||||
Sbjct: 798 aaaacacatggtgagactcat 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)