Query= MSMg01no309_h01.b1 MSMg01no309_h01.b1 CHROMAT_FILE:
MSMg01no309_h01.b1 PHD_FILE: MSMg01no309_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:01 2005
(323 letters)
>mm_chr2_40993503_40994223
Length = 721
Score = 557 bits (288), Expect = e-163
Identities = 312/320 (97%), Gaps = 2/320 (0%)
Strand = Plus / Plus
Query: 4 ggaattcacactaaatgcatttaatacaaaaggcttaacacttcctctcagggataggaa 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacactaaatgtatttaatacaaaaggcttaacacttcctctcagggataggaa 263
Query: 64 ataaatgttcctctgaccatcatcattgatttgcgttcccactattgttctactgttttg 123
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataaatgttcctctgaa-atcatcattgatttgcgttcccactattgttctactgttttg 322
Query: 124 gcatatatatatgtcagggaccttatgtgaccacaggcccgccttgccctcttctttttc 183
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcatatatg-atgtcagggaccttatgtgaccacaggcccgccttgccctcttctttttc 381
Query: 184 atatcagaaatgaaacccaggctacttaatgtttcccagtatagctttttaacaggaaga 243
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 382 atatcagaaatgaaacccaggttacttaatgtttcccagtacagctttttaacaggaaga 441
Query: 244 tgtcaaactgagacaggcataacacagatcagaaagtcctaggaaatcatcaatcctttc 303
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 442 tgtcaaactgagacaggcataacaccgatcagaaagtcctaggaaatcatcaatcctttc 501
Query: 304 cacaaaattaagatctttta 323
||||||||||||||||||||
Sbjct: 502 cacaaaattaagatctttta 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 721
Length adjustment: 9
Effective length of query: 314
Effective length of database: 712
Effective search space: 223568
Effective search space used: 223568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_h01.g1 MSMg01no309_h01.g1 CHROMAT_FILE:
MSMg01no309_h01.g1 PHD_FILE: MSMg01no309_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:01 2005
(290 letters)
>mm_chr2_41183806_41184495
Length = 690
Score = 549 bits (284), Expect = e-161
Identities = 287/288 (99%)
Strand = Plus / Minus
Query: 1 tcagtatttgttatttgtgcttgctattggaaagaaatgataaaggtatcaggcctttta 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 488 tcagtatttgttatttgtgcttgctattggaaagaaatgataaaggtataaggcctttta 429
Query: 61 ttttgattcatgatttgaaatatagtcaaatgtagtcaaatatagttgagaaagatataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttttgattcatgatttgaaatatagtcaaatgtagtcaaatatagttgagaaagatataa 369
Query: 121 tggtcgagatgtctatggcaatgggattatgtggcagcaacttactctatatcattagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tggtcgagatgtctatggcaatgggattatgtggcagcaacttactctatatcattagag 309
Query: 181 taagttatattagaaaatggagcttggagtggccagaaattatgtccactgcctagtctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 taagttatattagaaaatggagcttggagtggccagaaattatgtccactgcctagtctc 249
Query: 241 cattttgaataattctacaaacatctgaacagtgatacagtctggggt 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cattttgaataattctacaaacatctgaacagtgatacagtctggggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
