BAC Information

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BAC

Clone NameMSMg01-309N17
Chromosome2 (Build37)
Map Location 145,052,658 - 145,225,566
singlet/doubletdoublet
Overlap geneSlc24a3
Upstream geneSnx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneLOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309N17.T7 (MSMg01no309_n17.b1)MSMg01-309N17.TJ (MSMg01no309_n17.g1)
ACCAG433526AG433527
length781773
length of high quality
(start - end)		291 (45 - 335)245 (76 - 320)
definitionCHROMAT_FILE: MSMg01no309_n17.b1 PHD_FILE: MSMg01no309_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:32 2005CHROMAT_FILE: MSMg01no309_n17.g1 PHD_FILE: MSMg01no309_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,225,312 - 145,225,566)(145,052,658 - 145,052,902)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAGGACCATAAAGAACTGTGTCCCATAGCCTCACTGCAATGAGAA
CCCCCAGAAGCAACAGGGTCAGGTAATCTTGTATACTCAGTCTTGAACAG
CAAGATGGCTTGTTTTGAACAAAGTGGAGAGTAAGGACTGATAGTCAAGG
TTATCTTCTGCCCTCCACATGCCATAGACTCATGCACACCCATACACACA
ACCACACACACAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACACGCACACTCACACACA
CACACANATTTTCAGTGGGTTTCCAAAACCAAGACCCCTATTTTTTTTTT
GTTGTGAGAATGTGTGTTCCCCCCCCAAAAAAAAAAAAAAAAAATGTGGG
GGGGGGGTGGTATTATTTTTCCCAATCCTTATATTCCCCCTCTCTCGTAT
TTTTGACCCCGTCTTATTACCCCTTCCAGCCCTTAATTATTTATATGACC
TCACACACCCTATATTTTTTTTTTACCGCACCTCCCTCCTTCCGTCGTTT
TTGATATTCCTAATACTTCCCCCTTTTACTTCCACCCGCCTTTAACCCGG
TTCTCGTGCAGTGTATTCCCATTTTTTATATTTATTATTACTCCTCCCTC
CTTTCTACTGTAGCTGTACCTCCAAACCCTCTTATACTCCTTTTTTATTT
TTTATAACTCAGCCTTTTCTCTATTATCGCA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGAAACTGGAAATGTAGGGGCCC
TTGGAAAGTCACATGGGGGACAATGAGATCCTATCAATCCTGCTTGTGGG
TCAGGAGATAAGTGGTGGTGGGTTAGCACCCCACCTTTCCCAGCCTGTCG
CTTGCTGTCAGGCTCAGTAGTGTCCTCTTTCTCCAGCTTGTCATGCCCCT
CGATGGGCCTGAGACTCAGGCTGAGACAGGAGGGCCTGGGGCTGATCATG
TTTTTCCATTCACCCCTAGTGCTTTTTTCTTGTTGCTGGCTTCAGTTTCC
AGCTTGGATATTTGTGTGNNTTCCCCAAAACCAGCCCCGNAGNAAGAGTG
AAGAGAATTTGTGTTTGTCCCCCCCCAAAAAAAAAAAAAACCCTGGGGGG
TGCGGGGCTCTTCGGCGCCTAAGGTATTCGCTTCTCTTCTGTAGTCCTTT
TCTCTTGCTCTCTACCGCTCCCTAGCACGCCCCTATTCCTTTGTCCCCCT
TTAGCTTTCATCCCCACTTCTTTCTCGTTATCCGCTCCTCAATCTGCCTC
TTGTATCTCTCTTTCTCCTACTTTTCCTCCCCTCTCCTTCCATCTTTTGC
CCCCTCCTCCCTCTCTTTTTCCCCCTAAACCATCTTTTCGTTCCCACTCT
CTGCCCCACATATCTTTACTCTCTTTTTTTATTCTCTCCCTCCTCCCTTT
CTTATTTTTTACCTTAATCACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_n17.b1 MSMg01no309_n17.b1 CHROMAT_FILE:
MSMg01no309_n17.b1 PHD_FILE: MSMg01no309_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:32 2005
         (291 letters)



>mm_chr2_145225148_145225838
          Length = 691

 Score =  478 bits (247), Expect = e-139
 Identities = 253/255 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataggaccataaagaactgtgtcccatagcctcactgcaatgagaacccccaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaattcataggaccataaagaactgtgtcccatagcctcactgcaatgagaacccccaga 360

                                                                       
Query: 65  agcaacagggtcaggtaatcttgtatactcagtcttgaacagcaagatggcttgttttga 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agcaacagggtcaggtaatctcgtatactcagtcttgaacagcaagatggcttgttttga 300

                                                                       
Query: 125 acaaagtggagagtaaggactgatagtcaaggttatcttctgccctccacatgccataga 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 acaaagtagagagtaaggactgatagtcaaggttatcttctgccctccacatgccataga 240

                                                                       
Query: 185 ctcatgcacacccatacacacaaccacacacacagtctctctctctctctctctctctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctcatgcacacccatacacacaaccacacacacagtctctctctctctctctctctctct 180

                          
Query: 245 ctctctctctctctc 259
           |||||||||||||||
Sbjct: 179 ctctctctctctctc 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 27
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no309_n17.g1 MSMg01no309_n17.g1 CHROMAT_FILE:
MSMg01no309_n17.g1 PHD_FILE: MSMg01no309_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:33 2005
         (245 letters)



>mm_chr2_145052458_145053102
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgaaactggaaatgtaggggcccttggaaagtcacatgggggacaatgagatcctatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgaaactggaaatgtaggggcccttggaaagtcacatgggggacaatgagatcctatc 260

                                                                       
Query: 61  aatcctgcttgtgggtcaggagataagtggtggtgggttagcaccccacctttcccagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcctgcttgtgggtcaggagataagtggtggtgggttagcaccccacctttcccagcc 320

                                                                       
Query: 121 tgtcgcttgctgtcaggctcagtagtgtcctctttctccagcttgtcatgcccctcgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcgcttgctgtcaggctcagtagtgtcctctttctccagcttgtcatgcccctcgatg 380

                                                                       
Query: 181 ggcctgagactcaggctgagacaggagggcctggggctgatcatgtttttccattcaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcctgagactcaggctgagacaggagggcctggggctgatcatgtttttccattcaccc 440

                
Query: 241 ctagt 245
           |||||
Sbjct: 441 ctagt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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