BAC Information

Click to search

BAC

Clone NameMSMg01-309O05
Chromosome2 (Build37)
Map Location 179,585,259 - 179,585,567
singlet/doubletsinglet
Overlap geneCdh4
Upstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413
Downstream geneTaf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309O05.T7 (MSMg01no309_o05.b1)MSMg01-309O05.TJ (MSMg01no309_o05.g1)
ACCAG433549AG433550
length727746
length of high quality
(start - end)
314 (36 - 349)517 (76 - 592)
definitionCHROMAT_FILE: MSMg01no309_o05.b1 PHD_FILE: MSMg01no309_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:35 2005CHROMAT_FILE: MSMg01no309_o05.g1 PHD_FILE: MSMg01no309_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTACA
ATTGAGAGAAGACTGAGGCTCTGGAGGAAACTGAGGGGACCCCAGGCTGC
TTGTGGGACCCCAGGCAGCTCATGAGTGCCCCTGAGCAAACCCCACCCTT
CAATGTTCTCTGCCGGCTTAGTCAATATTTAATCTTTTCCCATTTGTTTT
CCATTAGGACGCATATCTGAAACCTCTCATTAGCCCATCTTTCCAGAGAA
TAATGACTAATTTCCGACAGTAGCTTTCCTTTCTCTTACAAAGACCCTTC
CATTATTGTAATTTACTGATGGAGGAGGAGAAATTGCAGACAATTTCCTT
TTTTTTTTCACCGCCCCACACCAAGGTACGCCACGTCCTTGCCTGTGGCT
GGCCCCCCCCCCAAAAAAAAAATGCCAAGTTAATGTGACGTCATCTGGCT
TCATCCTATAGCTGGTCTGTGATACGTGATTCTTTCCGGGACTATACACA
GATTTCATAGTCCCGGAAGTTCTCAAAGTCACTCACATCTTTCACTCATA
CCTTGTATGGTTTGCCGTTTCCCGCCTTGAAGATTTTTTTTTACCTGTTA
GATCTCCCTGTCGCTTGACTGTTTCCGTCTCTGTACTTTATGCCTTGTTC
CTACCCCACCCCATCGCTTTAATCTTTTTTATCACTATTATTTATCTCCC
CCCTTTTTTTCCCCTCTTATTTTTATT
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCAT
GAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATG
GATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTG
GTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAA
TTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGT
GGCTTCATAAAATGAGCCCGCCCAGAGTACCTTCTACTTCTATTTTGTGA
AATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGATAGAA
CTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTAT
TAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGTTCA
ACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTC
CATTTCATCCAGGTTTTTCAGTTTTGTTGAGTATAGCCTTTTGTAAAAGG
ATCTGATGGTGTTCTGGATTTCTTCAGGATACTGTGCTATAGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_o05.b1 MSMg01no309_o05.b1 CHROMAT_FILE:
MSMg01no309_o05.b1 PHD_FILE: MSMg01no309_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:35 2005
         (314 letters)



>mm_chr2_179585055_179585768
          Length = 714

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctacaattgagagaagactgaggctctggaggaaactgaggggaccccaggctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcctacaattgagagaagactgaggctctggaggaaactgaggggaccccaggctg 454

                                                                       
Query: 65  cttgtgggaccccaggcagctcatgagtgcccctgagcaaaccccacccttcaatgttct 124
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 453 cttgtgggaccccaggcagctcatgagtgtccctgagaaaaccccacccttcaatgttct 394

                                                                       
Query: 125 ctgccggcttagtcaatatttaatcttttcccatttgttttccattaggacgcatatctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctgccggcttagtcaatatttaatcttttcccatttgttttccattaggacgcatatctg 334

                                                                       
Query: 185 aaacctctcattagcccatctttccagagaataatgactaatttccgacagtagctttcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaacctctcattagcccatctttccagagaataatgactaatttccgacagtagctttcc 274

                                                                       
Query: 245 tttctcttacaaagacccttccattattgtaatttactgatggaggaggagaaattgcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tttctcttacaaagacccttccattattgtaatttactgatggaggaggagaaattgcag 214

                    
Query: 305 acaatttcc 313
           |||||||||
Sbjct: 213 acaatttcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)