Query= MSMg01no309_o07.b1 MSMg01no309_o07.b1 CHROMAT_FILE:
MSMg01no309_o07.b1 PHD_FILE: MSMg01no309_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:35 2005
(190 letters)
>mm_chr2_84523842_84524431
Length = 590
Score = 339 bits (175), Expect = 9e-98
Identities = 184/187 (98%), Gaps = 1/187 (0%)
Strand = Plus / Plus
Query: 5 gaattcactaagtttcatatttcagatttttgacctatggatgctcaatgtacaaacttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactaagtttcatatttcagatttttgacctatggatgctcaatgtacaaacttt 264
Query: 65 gcttttgtttctgtttggttttgtgtgcacgtgcatatatgtatgtatgtttgtttaatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcttttgtttctgtttggttttgtgtgcacgtgcatatatgtatgtatgtttgtttaatt 324
Query: 125 gtatgattttttttaa-gatttatttattatatgtacgtacactgtagctgtcttcatac 183
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 325 gtatgattttttttaaagatttatttattatatgtaagtacactgtagctgtcttcagac 384
Query: 184 accccag 190
|||||||
Sbjct: 385 accccag 391
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space: 105924
Effective search space used: 105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no309_o07.g1 MSMg01no309_o07.g1 CHROMAT_FILE:
MSMg01no309_o07.g1 PHD_FILE: MSMg01no309_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:35 2005
(477 letters)
>mm_chr2_84700385_84701261
Length = 877
Score = 868 bits (449), Expect = 0.0
Identities = 470/481 (97%), Gaps = 8/481 (1%)
Strand = Plus / Minus
Query: 1 caggacatccaggactatatagagaatccctgtctcaaaagggatttgccggtgagacac 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 717 caggacatccaggactatatagagaatccctgtctcaaaagggatttgggggtgagacac 658
Query: 61 caagttactagaggtgactcggatttgcagtgatccacacttgagatgatactaggttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 caagttactagaggtgactcggatttgcagtgatccacacttgagatgatactaggttgg 598
Query: 121 agtgggacttaggcaggcaagcttgggaaacgagatgggggacatgtgacaggtgaaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 agtgggacttaggcaggcaagcttgggaaacgagatgggggacatgtgacaggtgaaggc 538
Query: 181 aaaaggattacagataccctggatatgagtgttcagagaaaagacatcaaaggtgtctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaaaggattacagataccctggatatgagtgttcagagaaaagacatcaaaggtgtctga 478
Query: 241 atggcatagctggggcagtgtagaaggaaggagagaagctgccttctgctgagatggctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 atggcatagctggggcagtgtagaaggaaggagagaagctgccttctgctgagatggctc 418
Query: 301 caggaagcattagccaaccacgtacccagagccttcccatga----ccccacattgcatg 356
|||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 417 caggaagcattagccaaccacgtacccagagccttcccatgagggg----atattgcatg 362
Query: 357 atgtaatccatgcagaaaagtatgtcaacagtgccttgaagttggaatgaggagaggagg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgtaatccatgcagaaaagtatgtcaacagtgccttgaagttggaatgaggagaggagg 302
Query: 417 gaatcaaggttgctcattgagatactacaagaaatctctacaagatgggtggggaggaag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaatcaaggttgctcattgagatactacaagaaatctctacaagatgggtggggaggaag 242
Query: 477 g 477
|
Sbjct: 241 g 241
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
