BAC Information

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BAC

Clone NameMSMg01-311C06
Chromosome2 (Build37)
Map Location 143,842,136 - 143,842,479
singlet/doubletsinglet
Overlap genenone
Upstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
Downstream gene4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311C06.T7 (MSMg01no311_c06.b1)MSMg01-311C06.TJ (MSMg01no311_c06.g1)
ACCAG433726AG433727
length7351,012
length of high quality
(start - end)
344 (74 - 417)---
definitionCHROMAT_FILE: MSMg01no311_c06.b1 PHD_FILE: MSMg01no311_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:54 2005CHROMAT_FILE: MSMg01no311_c06.g1 PHD_FILE: MSMg01no311_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACATCTTCTTCCCAAGGCAAATAGGAAGAGACTAGCTTCCAGTC
GGCTAGGGAGAGGATCTTAAATCTTACACCACACACCTACTCCAAGGCTA
CCCCTTCAAATAATGGCACTCCCTGGGCCAAACATATTCATACCACTACA
ACTGGTACTCTTAGGCTTCCAAATTCTGCCTCAGACCCTGAACGTCAGCT
CCACAAAACAATAGTGTAATGACAGATATTGGTGCATATACAAAATGGTC
CTATTGTATGACCTAATGATGCTGTAACCGTCTTAAGTTTGTGTGGTACA
TTCTAAGCTGTTTGTGGAATGCAATCACCCAATGTTGGGTGTCTCAGAAT
GTGTGGTGGAGCCTAAGTAACCCCCCGCCTGTTGTACCTCCCTCAGGACT
TCCCCCAGGAGCCTTCATTTAACACCATGTGTACTGTGCTAAGTATTCTG
TCCCAGAAGTGACACCACATGACCCTATCCCTCAGGCCAGAAAGCTCAGC
TCAAAGATGACTCCTATCTCTCCCTCACCTGGGTTCACCAAGCCCTGTTC
CCATCACCTTCTAAACACACGAATACCCCCCCATCTGAACCCTTCCAAGA
ACTCATGTTACTTCTTAGTTGATATATTTTGATGGGTCCTCTCCCAACCT
AGCGGGTCCCCAGCCTAATTGGCTCTCGGTTACTT
CGACTGACTAGTGCGGTAAGGCCCTGGGCGCGCCAGACCTGGGCCGCTCG
AACAGTATTAGGCTGACACCTATAGGAGAGGATNNCCGCGNNGAATTCCA
CTTCCTCTCCAACACTGCGCTGTCTCANNGCTGATNNGACACCCATNNNC
CACAGACATGATGAACACCTCGGGATGACGAGGAGAGTCTAGCCCGNNGG
CAGAACAGATCTACCATTGGGTGATACAAAGCTTCCATTCACACTCTAGT
AACACCCTGGGAGTACTATGTCGCGAACTTCTCCTCCATCTAGAGAGGAG
GTAACACACTGGCGGTGAACTCTTATCCACGACATCTGTTCTGTACCCTC
GAATCGGAGTAATGGCTTCACCTTCCCTCGGGATGTGGTGCACCACACCA
GTGCCTTCCTCGGCGCTCGAGCTGTATGTTTTTGTTTCTCCAACCAGCAA
AGAACGGCGCCAGGAAAAGCCNNNCCNAAGTTTTANNGNGGTGNGGATTT
CCAANANAACCGGAAAACCCCCAGGTNAGATTTTTATTAATTGTATNNNA
NNTTATNNNTGTTCTCCCCCCCCCACAAAATCTTCTATTCCNTTAAAAAC
GGGGGTCTTCTTGTCTTNCGCGTCTCCTTTCACGAACTGTAATTCGTTTC
CTCCCTGATCCACTCTACTTCGTGTAACCCCTATGCACTTCTTCGTAACC
ACTTTATAACTACACTGTTCCCTGTAGTACATGTCTCTCGCCCTCATCAT
ACGCTTCTTTCCTACTAAATCTCCTTTTCGTAAGCAATACCCGTGTTATA
CCTTGTTCTCTCTGACTCAGCACAACGATTACCTTAGCGTCTCATATCCT
CCTATTCGATTCCGTTGTTTAACTCTTCTTTTTCTACTCGGATCAAGCGT
TCGCAAATTGCACTGAGATACGATCCCATTCTACCATTTAACCCGCAACC
AATTGTACAACTTCTCTTCTCTTCCGTTTTCTAACACCTTGCGTCTACCC
CCCTTACTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_c06.b1 MSMg01no311_c06.b1 CHROMAT_FILE:
MSMg01no311_c06.b1 PHD_FILE: MSMg01no311_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:54 2005
         (344 letters)



>mm_chr2_143841809_143842552
          Length = 744

 Score =  658 bits (340), Expect = 0.0
 Identities = 343/344 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaataggaagagactagcttccagtcggctagggagaggatcttaaatcttacaccaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 671 caaataggaagagactagcttccagtcggctagggagaggatcttaaagcttacaccaca 612

                                                                       
Query: 61  cacctactccaaggctaccccttcaaataatggcactccctgggccaaacatattcatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cacctactccaaggctaccccttcaaataatggcactccctgggccaaacatattcatac 552

                                                                       
Query: 121 cactacaactggtactcttaggcttccaaattctgcctcagaccctgaacgtcagctcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cactacaactggtactcttaggcttccaaattctgcctcagaccctgaacgtcagctcca 492

                                                                       
Query: 181 caaaacaatagtgtaatgacagatattggtgcatatacaaaatggtcctattgtatgacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 caaaacaatagtgtaatgacagatattggtgcatatacaaaatggtcctattgtatgacc 432

                                                                       
Query: 241 taatgatgctgtaaccgtcttaagtttgtgtggtacattctaagctgtttgtggaatgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 taatgatgctgtaaccgtcttaagtttgtgtggtacattctaagctgtttgtggaatgca 372

                                                       
Query: 301 atcacccaatgttgggtgtctcagaatgtgtggtggagcctaag 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atcacccaatgttgggtgtctcagaatgtgtggtggagcctaag 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)