ACTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATAATTTGCTGTGTTTATCCTAGTAGAAGTTTCTCCTAAGATT
GGAGGGAGGAAGACAGTACCCTTTGTTTTCCAACATGCCAAAATCTTCTT
TCTTCTTATTTGATGGTCCTCTTTCTCCCTTTCTTCCTCCTTCTTGTCAT
CATCATTGTCATCATCATTGTCTTGACTGTCATTGTCATTGCTGACATCA
TCTGTGAGTGTTGGATGGGTATGTGTTCATTTGTATAGGTAATGGCATGC
ATGTGTCACTGCCTATCTGTGGTTTTTATACTACAACTAAGAAATTGGCC
ATTGCCTTCTAATTTTTTGGTGATTTCCCCCACACCCCCCCCCCTTTTGA
ATTATGGAATATATGGTTTTTTGTCCCCCCCCAAAAAAAAAAAAAAAAAA
AGGGGGGGGGGGGGGGGGTCCCCTCCTACTCTAATTTTATATCTCTTTAA
CGAGATTTATCAACATCACTCTACTTACTTTACATCTTTCTTTTTATCCT
CCCGACTCACAATACCTTACTATACATATTTATTTCACTTCTTTTTCATA
CATTCCTTTACAATCCCTATCTTCTTACTTCTACTTATAATATCCCATAA
TACTATTAACATATAATAAACTATTTTTTCTTTTTACCCTTTAAATATCT
ATTCTTTAAATTATATTATTCTTACACCTGACCCATTATTAATTTCTTCT
TTTTATTCCTCACATTACTCCTCTATTATATGCCCTATCTATATCTTACT
ACCATTATTATTAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCAGTGACAAAGTCCTTTCATATAAT
AGTGACTTCCTGTGCTTTCTTCTGAGCTGGTGAGTTGTAGCTACTTTGGC
AGCCTCTGAAAGACCAATGTTATATGTGACAGTCTCTGCCCACAGCAGAA
CCAGCAGAACAATCATTCCTGTGATGGAAGACAGAAGTTTGGTTCACCAT
GACTCAGAAGCTGACTTTACTTCCAACTTTCAGACTTTGACACCGGGATG
TTTGTTTTACACATATCTGAGTACAGTGAAACTAGGAAAAGAAGTTTTCT
GGTGTAAAACAATTCTTTGTGTTTACCCCCCCTCCCCCCATAATTACATA
GGAACTATTTTTAAAGGACCCCCCACCACTTAAAAGAATAATGTGTTCTA
GGGGGTGACTGCATGTGTTATCTTAAGGGCCTTTTGGAGGGTTTAGTGTT
CTCAGTACACATAGTGCACAGGTCACTAGGCTATGTATCACATCCATTTC
CAATGATCTGGGCTGGAAATTATGTTATAGAGTTCTTACTTCCTACAGAC
ATTCCGGACTTCCCTATAACCCATCTCTTCAAAACAAAAATTTTGTGCCT
TTCTACTATAACGTTTTTCATGAATTATTATCGGGAGGGAATATTACACG
TCATTTATAAATCGTTCTAATTCCCGCAATTTTTTTTGTGAATAACATTA
TTCC

Query= MSMg01no311_j06.b1 MSMg01no311_j06.b1 CHROMAT_FILE:
MSMg01no311_j06.b1 PHD_FILE: MSMg01no311_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:28 2005
         (274 letters)



>mm_chr2_100444093_100444766
          Length = 674

 Score =  514 bits (266), Expect = e-150
 Identities = 269/270 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataatttgctgtgtttatcctagtagaagtttctcctaagattggagggaggaa 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gaattcacaatttgctgtgtttatcctagtagaagtttctcctaagattggagggaggaa 290

                                                                       
Query: 65  gacagtaccctttgttttccaacatgccaaaatcttctttcttcttatttgatggtcctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gacagtaccctttgttttccaacatgccaaaatcttctttcttcttatttgatggtcctc 230

                                                                       
Query: 125 tttctccctttcttcctccttcttgtcatcatcattgtcatcatcattgtcttgactgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tttctccctttcttcctccttcttgtcatcatcattgtcatcatcattgtcttgactgtc 170

                                                                       
Query: 185 attgtcattgctgacatcatctgtgagtgttggatgggtatgtgttcatttgtataggta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 attgtcattgctgacatcatctgtgagtgttggatgggtatgtgttcatttgtataggta 110

                                         
Query: 245 atggcatgcatgtgtcactgcctatctgtg 274
           ||||||||||||||||||||||||||||||
Sbjct: 109 atggcatgcatgtgtcactgcctatctgtg 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no311_j06.g1 MSMg01no311_j06.g1 CHROMAT_FILE:
MSMg01no311_j06.g1 PHD_FILE: MSMg01no311_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:28 2005
         (291 letters)



>mm_chr2_100273063_100273753
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagtgacaaagtcctttcatataatagtgacttcctgtgctttcttctgagctggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagtgacaaagtcctttcatataatagtgacttcctgtgctttcttctgagctggtga 260

                                                                       
Query: 61  gttgtagctactttggcagcctctgaaagaccaatgttatatgtgacagtctctgcccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgtagctactttggcagcctctgaaagaccaatgttatatgtgacagtctctgcccac 320

                                                                       
Query: 121 agcagaaccagcagaacaatcattcctgtgatggaagacagaagtttggttcaccatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagaaccagcagaacaatcattcctgtgatggaagacagaagtttggttcaccatgac 380

                                                                       
Query: 181 tcagaagctgactttacttccaactttcagactttgacaccgggatgtttgttttacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagaagctgactttacttccaactttcagactttgacaccgggatgtttgttttacaca 440

                                                              
Query: 241 tatctgagtacagtgaaactaggaaaagaagttttctggtgtaaaacaatt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatctgagtacagtgaaactaggaaaagaagttttctggtgtaaaacaatt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)