CCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATAAAATCTCTTATTCATAAGCAGAGCTATGCCAATGAGA
GGATGTTAAGAAGGCTAGTATTCATCCCTGGCACTCCTCTTAATACTCAC
CCAAAGGTACCTTCAGAAATCACAGATTTCTAAGTCACAGGGGTCACAAT
GCACTTTGGCGTGAAAGATGCACCTAGCAAAAAGCCCCATTCATCTTTGA
AGAATGGATATGTTTTTCCCACACAAAATAATTCAGAAGAGAGAAAAGAA
AATTATAAGCTAATATTTCTTAAAAATCAGAGAAAAGGCAGGTAGAGAGA
GATGCTTACCTTAGCCCATAATAAGAAATGCATTTGAGAATAATTATACC
ACATATCAACTTAAAATGTGCTCTTGAGGCATAAACCAAGGCAAAGAAAT
AGAAGTAGTTTTTCAAAGCAAGGTAAAAATGAGGCATAAAGACTAATAAA
ACCAATAATATTTGTAAATGATAAAGTCAGTTATACAGTAGTTTTACACC
AAGAGTCCTGGTACTTTAAAATGTTTAGATATAATTTCAATTAAATTTAC
TTCTGTTTTAGAAATGACTCCCTCAGCAATAATCTACCTTAATATATATA
GAAATAGAAGAACTCAAAGATTCCTTAGGGAAAATTGTTGCAGCAACAAC
CCTTCTATATATATGCGTGAAATTGAG

CCTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTGTCTCAGTCCTTTTTAAT
TGTTTAAATGTCTTTCATTTGACCGCTTTTTTACTCTTATTTCAATCTCC
TAAGTTGTTATGGGTATGGGTTTGTTGTTGACTTAGTTCTTGGCTTGGTT
TTGGTTAAATCTGGACAATTACCCATTTTTTAATGTTTTGCAATTTAATA
GACTACAGATTTTTAAAATTATTACCTAACAATACTCTGAATTTCTTTGG
TGTATGTGATAATGCTTCACTGCTCATTTCTGATTTTCTTAATTTGGATA
CCCTCTTTTTCTTATAGTTAGTAGGGACAATAATCTGTTGATCTTGTTTA
ATTATTTTTTGGAATAACAGCTCATATTTTTTGACTCTTTGCATTGTTTT
CTTTGTTTCTATTTCATTATTTTCTGCTCTAATTTTTATTATTCTTACTA
TTGACTGGTTTGGGATTTGGTTTGTTATTGGTTTTGTGTTTGTTTTGTTT
TATGTTTCTAAAGTTTTGAGTTTCATCCTTGATTTATGCTTTGTCTGATT
TATTTTTAAATGAGATAATTAGAGCTATAAAGTACCCTCAGAGGGCTGCT
TTCATTGTGTACCAGAGGTTTTGTTGTTTTTTCTTTTTTAATTTAATTTA
ATGCTTTCTTTTACTTATTCA

Query= MSMg01no312_c03.b1 MSMg01no312_c03.b1 CHROMAT_FILE:
MSMg01no312_c03.b1 PHD_FILE: MSMg01no312_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:08 2005
         (677 letters)



>mm_chr2_55161877_55162953
          Length = 1077

 Score = 1234 bits (638), Expect = 0.0
 Identities = 665/674 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcataaaatctcttattcataagcagagctatgccaatgagaggatgttaagaag 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 ggaattcataaaatctattattcataagcagagctatgccaatgagaggatgttaagaag 818

                                                                       
Query: 64  gctagtattcatccctggcactcctcttaatactcacccaaaggtaccttcagaaatcac 123
           ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gctaggattcatgcctggcactcctcttaatactcacccaaaggtaccttcagaaatcac 758

                                                                       
Query: 124 agatttctaagtcacaggggtcacaatgcactttggcgtgaaagatgcacctagcaaaaa 183
           ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||
Sbjct: 757 agatttctaagtcacaggggtcacaatgcactttggtatgatagatgcacctagcaaaaa 698

                                                                       
Query: 184 gccccattcatctttgaagaatggatatgtttttcccacacaaaataattcagaagagag 243
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 697 gccccattcatctttgaagaatggatatgttttccccacacaaaataattcagaagagag 638

                                                                       
Query: 244 aaaagaaaattataagctaatatttcttaaaaatcagagaaaaggcaggtagagagagat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aaaagaaaattataagctaatatttcttaaaaatcagagaaaaggcaggtagagagagat 578

                                                                       
Query: 304 gcttaccttagcccataataagaaatgcatttgagaataattataccacatatcaactta 363
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gcttaccttagcccacaataagaaatgcatttgagaataattataccacatatcaactta 518

                                                                       
Query: 364 aaatgtgctcttgaggcataaaccaaggcaaagaaatagaagtagtttttcaaagcaagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aaatgtgctcttgaggcataaaccaaggcaaagaaatagaagtagtttttcaaagcaagg 458

                                                                       
Query: 424 taaaaatgaggcataaagactaataaaaccaataatatttgtaaatgataaagtcagtta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taaaaatgaggcataaagactaataaaaccaataatatttgtaaatgataaagtcagtta 398

                                                                       
Query: 484 tacagtagttttacaccaagagtcctggtactttaaaatgtttagatataatttcaatta 543
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tacagtagttttacaccaacagtcctggtactttaaaatgtttagatataatttcaatta 338

                                                                       
Query: 544 aatttacttctgttttagaaatgactccctcagcaataatctaccttaatatatatagaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aatttacttctgttttagaaatgactccctcagcaataatctaccttaatatatatagaa 278

                                                                       
Query: 604 atagaagaactcaaagattccttagggaaaattgttgcagcaacaacccttctatatata 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atagaagaactcaaagattccttagggaaaattgttgcagcaacaacccttctatatata 218

                         
Query: 664 tgcgtgaaattgag 677
           ||||||||||||||
Sbjct: 217 tgcgtgaaattgag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)