BAC Information

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BAC

Clone NameMSMg01-312D08
Chromosome2 (Build37)
Map Location 9,103,707 - 9,103,961
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040710, LOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312D08.T7 (MSMg01no312_d08.b1)MSMg01-312D08.TJ (MSMg01no312_d08.g1)
ACCAG434491AG434492
length731738
length of high quality
(start - end)
74 (40 - 113)242 (68 - 309)
definitionCHROMAT_FILE: MSMg01no312_d08.b1 PHD_FILE: MSMg01no312_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:14 2005CHROMAT_FILE: MSMg01no312_d08.g1 PHD_FILE: MSMg01no312_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGGCCCATACCTAAACATGATATAAGCAATCTACAGCAAACCAGTAGCCA
ACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCAGGG
ACTAGACAAGGCTGCCCACTTTCTGCCTACCTATTCAACATAGTACTTGA
AGTCCTAGCCAGAGCAATTAGACAACAAAAGGAAGTCAAGTGGATAATAA
TTGCAAATGAAGAAGTCAAAATATCACTATCTGCAGATGATATGATACTA
TATATATGAGTGGCCCTAAAAATCTAGCAGAGAACACCTAAACCTGATAA
ACTTTTTCAGTGAAGTTCCCGGACATAACCCCAAGTTATACAAGTCAATG
GCCTTTCTCTACCCCCCCCAAAAAAATAGCAAAAAAAGTGGTTGGGGGGG
GAACTCCCATCTCAATATTTCCACATAATATATAACACATTGTGGTGACT
CTAACTTAATGAAGTAAAATATCTGTATGATAAGAACTTCACGACCCTGA
ACACTGATTCAACGAATACCTCTAATGACGCAAAGACTCTCCTATGCCCA
TGCATTGGTTAGACTTCTATTGTCAATCTTCTTTCTGTTCAAACCATCAA
TTGACTCCTGTTATCCCCTTTATACCCCATTTCACATCTTTTTGTACTTA
ACTTACCCCCTTGTTACTTTTTTATTCGCCG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACTTCCTTTGCTGCATGAGGTGATAGTGACCT
CATCAGCTCCAGTAGGCAAAGCTGGATAGCTCTAGTCCCAGCTGCTTCCA
GGAGGGGGAAACTAAAAAGAAAGGTGTTTTTTTTTTTTTTTTTGACACTG
TGTAGAAATTTCCATTACATTCGTTTCACATTTATACTTCTTTTTTTATT
ATTTACTTTTTTATTATTGGGTATTTGTTTCATTTACATTTCCAATGCTA
TCCCAAAAGTGCCCCACATCCTCCCATACCCACTCCCCTACCCATCCACT
CCTACCTTTTTTATTTGGCGCCCCCCCGCCCTGAGGCATATAAAGTCCGC
ACAACCAATGGCCCCCCCTTTCACAAAAAAGAAAAAACTAGGGCGTGGTG
GGAGACCTATGTATCTTGAGACACTAGCTCCGGGCGGGGGTGTTGGGTAG
TTCCTAATGTTGCTCCTTCTATAGGTTTGCAAATTCCCCCAGTTCCCTGG
GTTACTCCTCTATTTCCTCCATTGTAGTGCCCTGTGACCCTTTCATCATT
TGACTTGCAGTATCCCTTTCTTGTGTCCGTTATTATCTATTAAATTCGTA
CAATTAACGGCTTTATCATTTTCCCCTTTTAACACAATTTTCCTACCGCC
CCTTCTTGTTTACCCCTTTACGTCCTCCCATTCACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_d08.g1 MSMg01no312_d08.g1 CHROMAT_FILE:
MSMg01no312_d08.g1 PHD_FILE: MSMg01no312_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:14 2005
         (242 letters)



>mm_chr2_9103636_9104277
          Length = 642

 Score =  416 bits (215), Expect = e-121
 Identities = 239/255 (93%), Gaps = 13/255 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttcctttgctgcatgaggtgatagtgacctcatcagctccagtaggcaaagctggat 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 326 cacttcctttgctgcatgaggtgatagtgacctcatcagctccagcaggcaaagctggat 267

                                                                       
Query: 61  agctctagtcccagctgcttccaggagggggaaactaaaaagaaaggtg----------- 109
           |||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct: 266 agctctagtcccagctgcttccaggagggggaaactaaaaagaaaggtgttttttttttt 207

                                                                       
Query: 110 --tttttttttttttttttgacactgtgtagaaatttccattacattcgtttcacattta 167
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tttttttttttttttttttgtcactgtgtagaaatttccattacattcgtttcacattta 147

                                                                       
Query: 168 tacttctttttttattatttacttttttattattgggtatttgtttcatttacatttcca 227
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 146 tacttctttttttattatttacttttttatttttgggtatttgtttcatttacatttcca 87

                          
Query: 228 atgctatcccaaaag 242
           |||||||||||||||
Sbjct: 86  atgctatcccaaaag 72


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)