BAC Information

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BAC

Clone NameMSMg01-312F16
Chromosome2 (Build37)
Map Location 142,893,037 - 142,893,321
singlet/doubletsinglet
Overlap geneSnrpb2
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneOtor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312F16.T7 (MSMg01no312_f16.b1)MSMg01-312F16.TJ (MSMg01no312_f16.g1)
ACCAG434596AG434597
length732732
length of high quality
(start - end)
302 (431 - 732)289 (69 - 357)
definitionCHROMAT_FILE: MSMg01no312_f16.b1 PHD_FILE: MSMg01no312_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:24 2005CHROMAT_FILE: MSMg01no312_f16.g1 PHD_FILE: MSMg01no312_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAACTTGTTACAAGGACACATGCTCCACCATGTTCATAGCAGCCTTATTT
ATAATAGCCAGATTTTGCCCAGAACCCAGATGTCCCTCAACAGAGGAATG
GATACAGAAAATGTGGTACGTTTACACAATGGAGTACTACTCAGCTATTA
AAAACAATGAATTCATGAAATTCGTAGGCAAATGGATGGAACTAGAAAAT
ATCATCCTGAGTGCGGTAACTCAATCACAAAAGAACACACATGATATGCA
CTCACTGATAAGTGGATATTAGCCCAGAAGCTCAGAATATCCAAGATACA
ATTTGTTTTTATTTGACACTCCCCATCAAGGAAGATCAAAGTGCAGATAC
TTCAGTCCTACTTACAAGGGAAAACAATAGAAAGAGTTACAGAGACAAAG
TGTGGAGCAAAGACTGAAGAAAAGACCATCCAGAGACTTCCCCACCTGGG
GACCCATCCCATATACAGTCACCAAACACAGAGACTATTGTGGATGCAAG
TGCTGGCTGACAGGAGCCCAATATATCTGTCTCCTAAGAGGCTCTAGGAG
TGCCTGACAAATACAGAGGTGGATGCTCTCAGTCAACCATTGGACTGAGC
ATAGGGTCCCCAATGGAGGAGCTAGAGAAAGGACCCAAGGAGCTGAAGTG
GTTTGTAGCCCCATAGGAGGAACAACAATATG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTAACTTAAATGGTAAAGTGGCTTGAGAGGA
AATAGAAAGAGAGACACCGGCTGCTATGACTGGGCTTGGTCTTCCTATAC
CAAACAGAGTCAGCAAGATGAGGCCAGTGAGCACTGAAGCACACTGACCT
ATGCTAAGGCTTTATTAAGTATATTGCATAACCCCACAGCCCAGTGAGCA
TCTAAGCGTGCAGACTCTGAAAGAGTAGGTGTAGGTAAGGCTTCAGACGC
TGTGCTTTTAGCGAGCACAAAGCGAATGATGACCAGCTTTGAGGAATGGG
CCTTATTTTTTTACTAACCCCCCCGCCACATGACTAAATTCACCACTGGT
GAAATGGCCTAATATTTCTGCCAATAAACAGTTGACTACCTCGGGTAGAG
CTGTCTGCAAACTGTAATTTCAATTCAACCAAGCACATCTTTGGAGCTCA
AAGAGTCAACATTTCTCTGATGACATCAAATCACAATAATCCTATAAAGT
ATGTTTATTCCAATACTACTGATCTTGTTCTGAAGAGAAGGCAAAGCATT
TTCTTGTAGTGTGAACAGAAGGCAAGGAGCTCTTAAAACCAANAGGGATT
CTTTCTTTCCCCTCCTTCAGCTAGGAAAGAATACACCAGGGGAAGAAGAG
GAAAGCAGGCTAGACCTGGTCTTCTACTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_f16.g1 MSMg01no312_f16.g1 CHROMAT_FILE:
MSMg01no312_f16.g1 PHD_FILE: MSMg01no312_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:25 2005
         (289 letters)



>mm_chr2_142892837_142893523
          Length = 687

 Score =  482 bits (249), Expect = e-140
 Identities = 277/287 (96%), Gaps = 2/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaacttaaatggtaaagtggcttgagaggaaatagaaagagagacaccggctgctatg 60
           ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 485 agtaacttaaacggtaaagtggcttgagaggaaatag--agagagacaccggctgctatg 428

                                                                       
Query: 61  actgggcttggtcttcctataccaaacagagtcagcaagatgaggccagtgagcactgaa 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 427 actgggcttggtcttcctataccagacagagtcagcaagatgaggccagtgagcactgaa 368

                                                                       
Query: 121 gcacactgacctatgctaaggctttattaagtatattgcataaccccacagcccagtgag 180
           |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 367 gcacactgacctttgctaaggctttattaagtatattgcacagccccacagcccagtgag 308

                                                                       
Query: 181 catctaagcgtgcagactctgaaagagtaggtgtaggtaaggcttcagacgctgtgcttt 240
           | ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 307 cgtctaagcgtgcggactctgaaacagtaggtgtaggtaaggcttcagacgctgtgcttt 248

                                                          
Query: 241 tagcgagcacaaagcgaatgatgaccagctttgaggaatgggcctta 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tagcgagcacaaagcgaatgatgaccagctttgaggaatgggcctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 687
Length adjustment: 9
Effective length of query: 280
Effective length of database: 678
Effective search space:   189840
Effective search space used:   189840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)