BAC Information

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BAC

Clone NameMSMg01-312H21
Chromosome2 (Build37)
Map Location 12,626,539 - 12,626,695
singlet/doubletsinglet
Overlap genenone
Upstream geneIl15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
Downstream geneLOC100040837, Pter, C1ql3, Rsu1, Cubn, Trdmt1, Vim, St8sia6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312H21.T7 (MSMg01no312_h21.b1)MSMg01-312H21.TJ (MSMg01no312_h21.g1)
ACCAG434696AG434697
length750756
length of high quality
(start - end)
239 (123 - 361)157 (68 - 224)
definitionCHROMAT_FILE: MSMg01no312_h21.b1 PHD_FILE: MSMg01no312_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:35 2005CHROMAT_FILE: MSMg01no312_h21.g1 PHD_FILE: MSMg01no312_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
ACAGGGAACATGATCTGGTATTGGGTTGGGGGGAAGTACTGAAGTCCTGA
GGGCCATCAGAATGAATGCCAAAAACAGGCAACTTCAGGAGGTAGGAGGT
TGGGAGGACCATCCAGAATATACCAGATACCTGGGAGATGAGTGACTCTC
AGGACTCAAAGGGAGGGACCTTAGATGAAATGTTCTACAGAGGGGAGAGG
GAACTCTTAGAGCCCACCTCCAGCAGAAAGACAGGGCATCAAGTGAGGGA
TGGGGTTGCCATCCTACAGTCAAAACTCTGACCCATAATTATTCCTGTCT
GAAAGAATTACATTTTTTGTTCCTGCCCCCGCACGAAAAGAAGGTCCAAT
GAAAAGCCCAAAGTGAGATCCCCCTCAAGGAAAGGACTCAAGGCCTGACT
CTATTACTGATGCTATGGAGCGCTTACAATAAGGGACCTATCCTGAGTGC
CCTCCATAAGACCCAACAAGCTGCTGAAAGAGTCAGATGCATATACTTGC
ACCCAACCTATAGGTAGAAGCTGCTGACCCCTGTGGATGAATTAGGGAAA
GCTGGAAGAATCTGACGATGATAGAAACCCTATAGGAATAGCAGTAGTCT
CACCTACACTGTATCCCTGAGATCTTCTCTATATCTGGACGATTTACCCC
TTTTTCTGTATCGCATTCTGGTATGCAAGTTTCTCATCTCTTATACAGTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCGTGTATCCAGCCCTGCCATGGAAAAGCGTA
GGAGCTTCCTATTCTTCCAAACAAAACCAATCTCCACATACACGAGACTC
AACCCCCACCACACCACTCAGATTTATTTATATGAATTCAAAAAAAGTGG
GTATGTCAGATCTCATTTTAGGATTTCAATGNNNNTGATTACTGGGCGAA
CCCNNNCTAAAACAGCTCAGTGGGAAAGAAGAATATTTGTTACAAAGACA
ATGTGGCGTGAGTAAATTTGTGTGGTTGAGTTCGTGCAGTGAGGAAAGCA
AAGCAAATTCTTTTTTTTAACCCCCCCGCCCCCACACAAAGGACCGGGAA
AGGGGGGGGACAAACCCCCCAAAGAAAACAAAAAAAANNNNNNNGNNTTC
ATGGGTTNAAACAGAGATAAGATGAATAANNAAGGNNNNNNNNNNAGCCT
TNNNNNNNNNNNNNNNNTNNNTNNNNNNNNNNNTNNNNNNTATTTTTAAA
AAGGAACACACTAAAGGTTTTTGAAAATTTTTTTTAAACCCCCTTTTAAA
AAAAGGGATCCTCTGGGCGTTAAAAAAAAAAAGAAAAAAATCACTTTNNN
TTAGGTCGATTTNNNNNNNNNNNAATATTTNNNNNNNTNNCGGGTCCTCT
TAATTTTTTATTTATTCCCCTTAAATNCTCTGGATTAACGGAGGGGGTGA
TAGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_h21.g1 MSMg01no312_h21.g1 CHROMAT_FILE:
MSMg01no312_h21.g1 PHD_FILE: MSMg01no312_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:35 2005
         (157 letters)



>mm_chr2_12626339_12626895
          Length = 557

 Score =  275 bits (142), Expect = 1e-78
 Identities = 154/158 (97%), Gaps = 2/158 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcgtg-tatccagccctgccatggaaaagcgtaggagcttcctattcttccaaacaaaa 59
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcgtgct-tccagccctgccatggaaaagcgtaggagcttcctattcttccaaacaaaa 259

                                                                       
Query: 60  ccaatctccacatacacgagactcaacccccaccacaccactcagatttatttatatgaa 119
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccaatctccacatacaagagactcaacccccaccacaccactcagatttatttatatgaa 319

                                                 
Query: 120 ttcaaaaaaagtgggtatgtcagatctcattttaggat 157
           ||||||||||||||||||||| ||||||||||||||||
Sbjct: 320 ttcaaaaaaagtgggtatgtcggatctcattttaggat 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)