BAC Information

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BAC

Clone NameMSMg01-312L02
Chromosome2 (Build37)
Map Location 102,571,316 - 102,571,523
singlet/doubletsinglet
Overlap geneSlc1a2
Upstream gene2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik
Downstream geneCd44, Pdhx, Apip, Ehf, Elf5, Cat, Abtb2, Nat10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312L02.T7 (MSMg01no312_l02.b1)MSMg01-312L02.TJ (MSMg01no312_l02.g1)
ACCAG434839AG434840
length754785
length of high quality
(start - end)
212 (42 - 253)125 (72 - 196)
definitionCHROMAT_FILE: MSMg01no312_l02.b1 PHD_FILE: MSMg01no312_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:49 2005CHROMAT_FILE: MSMg01no312_l02.g1 PHD_FILE: MSMg01no312_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTAACACTGGAAGCTGGCTCAGCCAGACCCTCTCTCTTGGTCTCCATTG
CCCAACAAAGTAAGGGTAATGACAAGACACCCAGGGGTGGGGGATAACTA
AACCTTTACCATGAACGTACAAGTTCTTTTAACCTTAGCTTCTCCACTGC
ATTAGCTAAACAGCTGCTAATGTTGCAACTGTTACCCAGCCCCCTCTCAC
AAACATGCACGCAAGTCCTGTTTCAATGGCAAATCCAGCTTATTGTGTAA
ATTATGCTCCAGGATTCTTTTATAGTTCGTGGTGTAGAGATGCTAAGTTT
GTGCCGTGTTTTATTTTCCCCAACAATCCCCTCTTATCGTTCTGCCTAGA
TTCTCTAATATTACCCCCCCCAAAAAAAAAAAAAAAGATTTCCGATGTGC
TGTGGCACTATTGCATGTTCACTCATGTGTTACCAATTCCTCCTTTTCCT
CCCCTATTCTCTCACAGAGGCGGTTATGATAACATTCTTCTCGGACGTAT
TGCACTTTTTTGCCTCGTTTCTGCGTTTTTCTTACAATTTCTTTCCTTAC
CCTGTTCCTCCCTTTTTCCCATCTACTTTCCCTTTTTCTATGCTTTTTGG
TATTCTTTTTTTTCTCTTCCTATTTCACCCTTATCTTCCACCCTTTTTCT
ACCCAATATTGAACAAACACATATTCCCGCATTTTTTGCTTTTTTTTATC
GCCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAAT
GGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGACATGATCAT
GTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATT
TCCGTATATTAAACCATCCCTGCATCCCTGGAATACATAACCCTTACTTT
GTCTCCTTTATGCATCATTGCCTTATTGTGTTCCCGCACTTCTGCCACTG
AGAATTTTATCGACTATCTTTCCACTTTTCTTTTCATTAATACCCGTTCT
TATCCTTCCCAATCCTTGTTCTTTTTTTTTTCCCCCCCCCCCCCCCCCCC
CTTCATTACCCCTCTTTCTTTAATTATTTAATTATTGAATTCCCCCCCTC
CTTATAATAAAAAAATATACTACCTCTTTTTTTCNNNNNNNNNNNNNNNN
NTTAGGGCTCTGGCGTCNNNNTTTAGCAGTGTTTTTTTGCTTTAAGCACA
NNNNCAATTATTGGTGTTTTGTGTATCGTTCATATACCCCCTCTTCATAT
AACAGAAAATCTATTTTTTCTTCCTTTTTCCTTACATTATTTTTATTTAA
TTATCCCCCAATAAAAATAATCAACATTTTATTATAAATTTTCCTACCTT
TCCTCTCTGTTTCCTTTTCCCTCTCCTTCTCCCACAACAAAGCCCTTTTT
ATCCCTTCCTTTTCACAAACCCCTCCTCTCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_l02.b1 MSMg01no312_l02.b1 CHROMAT_FILE:
MSMg01no312_l02.b1 PHD_FILE: MSMg01no312_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:49 2005
         (212 letters)



>mm_chr2_102571112_102571723
          Length = 612

 Score =  395 bits (204), Expect = e-114
 Identities = 207/208 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaacactggaagctggctcagccagaccctctctcttggtctccattgcccaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaattcttaacactggaagctggctcagccagaccctctctcttggtctccattgcccaa 353

                                                                       
Query: 65  caaagtaagggtaatgacaagacacccaggggtgggggataactaaacctttaccatgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 caaagtaagggtaatgacaagacacccaggggtgggggataactaaacctttaccatgaa 293

                                                                       
Query: 125 cgtacaagttcttttaaccttagcttctccactgcattagctaaacagctgctaatgttg 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 292 cgtacaagttcttttaaccttagcttctccactgcattagttaaacagctgctaatgttg 233

                                       
Query: 185 caactgttacccagccccctctcacaaa 212
           ||||||||||||||||||||||||||||
Sbjct: 232 caactgttacccagccccctctcacaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)