BAC Information

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BAC

Clone NameMSMg01-313I02
Chromosome2 (Build37)
Map Location 56,294,582 - 56,295,002
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313I02.T7 (MSMg01no313_i02.b1)MSMg01-313I02.TJ (MSMg01no313_i02.g1)
ACCAG435413AG435414
length1,2591,246
length of high quality
(start - end)
761 (55 - 815)421 (475 - 895)
definitionCHROMAT_FILE: MSMg01no313_i02.b1 PHD_FILE: MSMg01no313_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:16 2005CHROMAT_FILE: MSMg01no313_i02.g1 PHD_FILE: MSMg01no313_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTTTTTTNNNNNNATCAATGGGCGCTATAXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTGGTTCAGTTCTGACCCTTATTTTTTAATGGGGTT
ATTTGATTTTATGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATA
TTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTT
GGTGGTCTTTTTGTCTTCTTGAGGGTGTCTTTTGCCTTGCAGAGGCTTTG
CAACTTTATGAGGTCCCATTTATCGATTCTCGATCTTACAGCACAAGCCA
TTGCTGTTCTATTTAGAAATTTTTCCCCTGTACCCATATCTTTGAGGCTT
TTCCCTACTTTCTCCACTATAAGTTTTAGTGTCTCTGGTTTTATGTGGAG
TTCCTTAATCCACTTAGATTTGACCTTTGTACAAGGAGATAGAAATGGAT
CAATTCGCATTCTTCTACATGATAACAGCCAGTTGTGCCAGCACCATTTG
TTGAAAATGCTGTCTTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAA
AGATCAAGTGACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCCATTCTG
TTCCATTGATCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTAT
CACAGTTGCTCTGTAGTACATCTTTAGGTCGGGCAAGGTGATTCCACCAG
AGGTTCTTTTATCCTTGAGAAGAGTTTTTGCAATCCTAGGCTTTTTGTTA
TTCCAGATGAATCTGCCGATTGCCCTTTCTAATTCGTTGAAGAATTGAGT
TGGAATTTTGGGTATTGGGGACTTTTGGGATAGCAATGGGAAATGTTAAT
GAGGAAAATACCTAATAAAAAATGTTAAAAACAAGAAATACTATGCTCTC
ATTCTGAAGGGAAGGATGCTATTTAGGAAGAATGGGAGGTAAGTCTGTTT
ACTTGTAAGGTTTGAGGAAGGGTTTTCCAAAGGAAATCCCGTGGTTTTCC
TGAAAACTTCTACCTTCTAATATCCTTAACCGACAATTTTGCGGAACTTG
GATACATAAAAACATTTTATTTCCTTTTCCTAACAACCTCCTCTTATCCA
TCCTTTTTCTCTTTTCACTAACTCTCTATTTCCTACTTATCTTTTTTTCT
CCTTCTAAATCTCTTCTTTCTCCTCTCTTCTCATTATCCTCTCTTCTTTA
TTCTTTCGTCCACTTCTCTCTCTTATTACTTTTTCTTTACTACTTCTCTT
TCCTATTTC
NAATAACANNNNNAATAGATGGNATGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGATGTCATAAAAAGCAG
AGCTACTTAAATTGGATGATTAAATAAAAATGACCTGAACATTGTAAATA
TTCACAGATCACATCATTGACGTGTAATGTGCCGTTAAATGTTGTCAAAT
TAACGGGGAAATTACATGTGTGAGAAGTAGGATGAATAAAAAGAAGACAT
TTAAAGATACATGGTCCTTCAAGTGAAAATTCCTAACATATATTACTGAG
ATGATTCACCAACCAGACAGCGGAACTAGGGGAATGAAATGTAAAATAAA
ATTCAGGGTGGGAAGGAAGCTGGTTAAAAACAACTCATTTTCAAACACCA
TAAATAGCAGTTAACTTTAAGATACCAGTCATTCTTAGGGTGTTTTGTTT
TATCTGGAGGAAACTTAAACATGGAATTTTTAGAAATACGTAATAGATAT
TGCCTCTCATTTCTTAAAATCTGTCTTTGGGCTAGTTCCAAATATTAATC
ATATGTCAATTTGACAGGAAAAATTATCAATTTTAGTTTACATATGGTCA
GTTTCTCTTGCTAAGTTGTATGTTGCTGGACTCATTCTAAATGTTTGGAT
TTCTTTGGAATGTATACATGCTACTCAAAAAGAAACAATAGTGTATGAGG
TATGCGCAATGTCTCTACTTTCCTGTGTCTAGCTGTTGTATTTTGTTAAT
AGTCATTTGCATTATTAACTTGTATCTAATTTGAATTTAATACATAATCC
AGATACCTCCAAATGACGTACAGTTTAATTACTTAGAGTTAAATACAGAT
GTTTAGTTAAGCTGCATTTAGATTTGACCTTTCATAGTTTTAACAAGTAT
TTGGAAAATATTAAATAAAAATCATTATTTTTTACCCCATATTCTTTTCA
TTCATCTATTTTTCTCATCACAAATTGGAAGTACCATACTACCTAAGCCG
CAAGTACTTTTCCCAAAAAGGGGGTCCTAATAAATAAAATCCACAACCTT
GTATGGAAAATTTATGCCCCCACCTCAGAAAAAAAAAAAAATCAAACCCC
CGGAATCCTTTTTACCCGTCCCAAATGTTTCCTTTGAAAAACCCACCCAA
GGCCCCAAAAAACCTTTTTTTTTTAGAGGGACTCAAAACCCCCCTCTGCG
TTTTTTAAAAGGGAAAAGGTGTTCTCTCTTTTTTGAAAAAAAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_i02.g1 MSMg01no313_i02.g1 CHROMAT_FILE:
MSMg01no313_i02.g1 PHD_FILE: MSMg01no313_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:16 2005
         (421 letters)



>mm_chr2_56294382_56295202
          Length = 821

 Score =  806 bits (417), Expect = 0.0
 Identities = 420/421 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttttagaaatacgtaatagatattgcctctcatttcttaaaatctgtctttgggcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttttagaaatacgtaatagatattgcctctcatttcttaaaatctgtctttgggcta 260

                                                                       
Query: 61  gttccaaatattaatcatatgtcaatttgacaggaaaaattatcaattttagtttacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttccaaatattaatcatatgtcaatttgacaggaaaaattatcaattttagtttacata 320

                                                                       
Query: 121 tggtcagtttctcttgctaagttgtatgttgctggactcattctaaatgtttggatttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtcagtttctcttgctaagttgtatgttgctggactcattctaaatgtttggatttct 380

                                                                       
Query: 181 ttggaatgtatacatgctactcaaaaagaaacaatagtgtatgaggtatgcgcaatgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggaatgtatacatgctactcaaaaagaaacaatagtgtatgaggtatgcgcaatgtct 440

                                                                       
Query: 241 ctactttcctgtgtctagctgttgtattttgttaatagtcatttgcattattaacttgta 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctactttcctgtgtctagctcttgtattttgttaatagtcatttgcattattaacttgta 500

                                                                       
Query: 301 tctaatttgaatttaatacataatccagatacctccaaatgacgtacagtttaattactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctaatttgaatttaatacataatccagatacctccaaatgacgtacagtttaattactt 560

                                                                       
Query: 361 agagttaaatacagatgtttagttaagctgcatttagatttgacctttcatagttttaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagttaaatacagatgtttagttaagctgcatttagatttgacctttcatagttttaac 620

            
Query: 421 a 421
           |
Sbjct: 621 a 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)