Query= MSMg01no313_l05.b1 MSMg01no313_l05.b1 CHROMAT_FILE:
MSMg01no313_l05.b1 PHD_FILE: MSMg01no313_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:42 2005
(716 letters)
>mm_chr2_161497997_161499112
Length = 1116
Score = 1125 bits (582), Expect = 0.0
Identities = 632/654 (96%), Gaps = 13/654 (1%)
Strand = Plus / Minus
Query: 67 gttagaatggctttaattgtgatgatggaacatgcatttgacaatcaaagactacagaga 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 gttagaatggctttaattgtgatgatggaacatgcatttgacaatcaaagactacagaga 1057
Query: 127 acagaatatttgatggtactatttccttttttaaaaacctcattatttt---tttgtttg 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1056 acagaatatttgatggtactatttccttttttaaaaacctcattattttttgtttgtttg 997
Query: 184 ttcttgtgagtacatatggggtgaggcatacacctgttgtgccatgtgtgtagagatcag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 ttcttgtgagtacatatggggtgaggcatacacctgttgtgccatgtgtgtagagatcag 937
Query: 244 aagacaagttgtagaagttggctctctctttctaccatgtgggtcttgaggatagaattc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 aagacaagttgtagaagttggctctctctttctaccatgtgggtcttgaggatagaattc 877
Query: 304 ag-taatcagcttggtatcaggtgtgttctgcccactgagccatctggtcaacctaacca 362
|| | |||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 876 agtttatcagcttggtagcaggtgcgttctgcccactgagccatctggtcaacctaacca 817
Query: 363 tttccttttacatgtgttgagtacaccacccttgcttgtgctgtttataaatgaatagag 422
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 816 tttccttttacatgtgttgagtagaccacccttgcttgtgctgtttataaatgaatagag 757
Query: 423 gtcatttaagaaatggcaatactgtcccaggcacatatttaaattgtatgtaattatttg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gtcatttaagaaatggcaatactgtcccaggcacatatttaaattgtatgtaattatttg 697
Query: 483 ctgacatgatttcttatcagggtctgggcgccagtatgaggaggaaaggctccttggcca 542
|||||||||||||||||||||||| ||| |||||||| | |||||||||||||||||||
Sbjct: 696 ctgacatgatttcttatcagggtcagggtgccagtataaaaaggaaaggctccttggcca 637
Query: 543 tgactagtctcctaggaaacgtgttcttcacttgtatcactccaccagcatatcatactg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgactagtctcctaggaaacgtgttcttcacttgtatcactccaccagcatatcatactg 577
Query: 603 ctgctgaaaccttttatataagagagagagagagagagagagagagagagagagagagag 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ctgctgaaaccttttatataagagagagagagagagagagagagagagagagagagagag 517
Query: 663 agagaatatgaatgagctgctctctaacgcaaggttttatcccagtggctttga 716
| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 516 ---g-atatgaatgagctgctctct-----aaggttttatcccagtggctttga 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space: 780836
Effective search space used: 780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no313_l05.g1 MSMg01no313_l05.g1 CHROMAT_FILE:
MSMg01no313_l05.g1 PHD_FILE: MSMg01no313_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:42 2005
(281 letters)
>mm_chr2_161335226_161335906
Length = 681
Score = 505 bits (261), Expect = e-147
Identities = 276/281 (98%)
Strand = Plus / Plus
Query: 1 gaatagacaacctcagggaagagatgctggcatgcaggacgctggtccaaggctgagaag 60
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 gaatagtcaacctcagggaagagatgctggcatgcaggatgctggtccaaggctgagaag 260
Query: 61 tgggagcgcccaataggaaggccagcattccattcatccaaagcccgtgaaattgtcctc 120
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggagcgcccaacaggaaggccagtattccattcatccaaagcccgtgaaattgtcctc 320
Query: 121 tatggctattttgacctctgttaatggcaattttgttgatcagatataataaatccagca 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tatggctattttgacctctgttaatggcaattttgttgatcggatataataaatccagca 380
Query: 181 gcaagggggaggggatgacaaaggacacccagagactgctacaggagcagaatggaactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaagggggaggggatgacaaaggacacccagagactgctacaggagcagaatggaactt 440
Query: 241 aagtgtgtctcgattaaagttccttagctcatatgctctgt 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtgtgtctcgattaaagttccttagctcatatgctctgt 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
