Query= MSMg01no313_p04.b1 MSMg01no313_p04.b1 CHROMAT_FILE:
MSMg01no313_p04.b1 PHD_FILE: MSMg01no313_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:14 2005
(413 letters)
>mm_chr2_9624390_9625202
Length = 813
Score = 427 bits (221), Expect = e-124
Identities = 314/366 (85%), Gaps = 36/366 (9%)
Strand = Plus / Minus
Query: 17 ggaattctggcataagaatcattgaggaatcagtaaatgtttcaaagctgttattattga 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 330 ggaattctggcataagaatcattgaggaatcagtaaatgtttcaaagctgttattgttga 271
Query: 77 ccacctgtagagaaatcccagcaggctggtgctaacagttcaactacagttataacacac 136
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ccacctgtagagaaatgttagtaggctggtgctaacagttcaactacagttataacacac 211
Query: 137 acacacacacacacacacacagagacacatacagatacacatacagacacacacacacac 196
||| | | ||||| |||||| |||| || ||||| ||| ||||||||||||||
Sbjct: 210 acagagatacacatacacac----acac--ac----acacacacacacacacacacacac 161
Query: 197 acacacacacacacctcttaccttcaaaacagtgtacagaaagaaaatttaacctctctc 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 160 acacacacacacacctcttaccttcaaaacagtgtacagaaagaaaatttaacct-t--- 105
Query: 257 tctctctctctctctctctctctctctctctctctctctctctctctctctcattggnaa 316
||||||||||| ||||||| ||||||||||||||| ||
Sbjct: 104 ----------------------tctctctctctgtctctctgtctctctctcattggtaa 67
Query: 317 ttggtgatggaactcaagacccattaaagtatatcctcaagtctaaatcaatgttttggg 376
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 66 ttggcgatggaactcaagacccattaaagtatatcctcaagtctaaatcattgttttggg 7
Query: 377 ggccaa 382
||||||
Sbjct: 6 ggccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_p04.g1 MSMg01no313_p04.g1 CHROMAT_FILE:
MSMg01no313_p04.g1 PHD_FILE: MSMg01no313_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:14 2005
(387 letters)
>mm_chr2_9453272_9454058
Length = 787
Score = 673 bits (348), Expect = 0.0
Identities = 369/376 (98%)
Strand = Plus / Plus
Query: 1 tttttccttctgacacattttcttcattctcaactaagaggaacatacaaccggcgtacc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 201 tttttccttctgacacattttcttcattctcaactaagaggaacatacaaatggtgtacc 260
Query: 61 tctacctgcagttgttaataatcagtatcacaatagctctttttcatcagggaattttat 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tctacctgcagttgttaataatcattatcacaatagctctttttcatcagggaattttat 320
Query: 121 ttaaaatgagtgtaagtgtaatgggaagcaggtttgaacccatgcctttgtctgtacctg 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ttaaaatgagtgtaagtgtaatgggaagcagatttgaacccatgcctttgtctgtacctg 380
Query: 181 aaatcaatgtaaaataaagctcatgttcaaagggaggaagcaaagcagtgctcagaagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatcaatgtaaaataaagctcatgttcaaagggaggaagcaaagcagtgctcagaagac 440
Query: 241 ccgagagcaaatgtgcttgaaaatgagatcaggtacaatcctttccagaattttccatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgagagcaaatgtgcttgaaaatgagatcaggtacaatcctttccagaattttccatga 500
Query: 301 gccaaacataggttacttgaaaatgtttcttttgagttaaatatgtgtgcttgaccagtc 360
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 501 gccaaacataggttacttgaaaatggtccttttgagttaaatatgtgtgcttgaccagtc 560
Query: 361 aatattgcactaaatg 376
||||||||||||||||
Sbjct: 561 aatattgcactaaatg 576
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
