BAC Information

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BAC

Clone NameMSMg01-313P05
Chromosome2 (Build37)
Map Location 129,298,511 - 129,298,802
singlet/doubletsinglet
Overlap geneF830045P16Rik
Upstream geneLOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896
Downstream geneSirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313P05.T7 (MSMg01no313_p05.b1)MSMg01-313P05.TJ (MSMg01no313_p05.g1)
ACCAG435729AG435730
length1,2891,243
length of high quality
(start - end)
662 (119 - 780)294 (501 - 794)
definitionCHROMAT_FILE: MSMg01no313_p05.b1 PHD_FILE: MSMg01no313_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:14 2005CHROMAT_FILE: MSMg01no313_p05.g1 PHD_FILE: MSMg01no313_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTTTNNNNNCCTCATTGGCGCTAAGACTACTAAGGGAGAGGATCCGCG
GAATTCATTTTTCTAGGCTCTCCTTGATTTCAAGTTTCCGTTGAGAAATT
AATTAGTTGTTCTTAAGGGCTTTCATTCTATGTGACTTGTGTTTTTCCTC
TTTTGGCTTTCAATTATATTATATTCCTCACTTCTCTTCCTAGATCCTCT
ACTTACCTTTGAGTCCTGATAATCTCTATTGTATTTGATTATTTCTAAGA
CTTCAAGTTTTCCAATTAAATCATTGGGTTTCTTAGTTCCACCTTCCTTT
CAGCTCAGGTCCTCTTCAAGGTCACTATCAAATCCTTCGTTGTCACTAAC
ATTTCCATCTGCTTTACGTTTGTGGGGTTTTAATTTTTTTCCATCACTCT
TTTATTTATATTCACTAAGTTCTTCCTCCTCAATTTCTTTTTTATTTATT
GAATTCTTTTTTCATACAATATATTCTAACCATGGTTTTCCCTTCCTCTT
AATCAATGCCAGTGCAATAGTGGGCGCAAATATTGTAGGAGTAACCAATC
ACTCTCTGAGTAGACTGAAGTCCCACTACATATTATGGAACCTGTGGCTT
ACACTACTTGGGTACCGAAGAACTTGAGAATGAATAGGCCACAGCCTACA
GGAAACAAATACTATTGTTATTCTAAAACCTAGCAAGAAAACCTTGCTTC
TAAGGCATAGATCAGAGCCCAATTCAGTCAACATCAGAGAAGCTTCCTCT
TCTGGTAGACAGAAACTAACACAGAGGCCTACAGCTAACCAATCTGCACA
GTGAGAGATTTGGCCATAATCATTCTTTTCTACTTAATTTCATTGGGCAG
CGTTGTTTTGTTTTGGTGTGTGTGTGTGTGTGTGTGTCGTCTTTAAACCT
TTTTGGTGAAATTTACAATGGTTTCCTTAAATTTCAGTTCTTCGGGGCTA
TTTGTTTATATACGTCTCTTGTCTTTAATTCTCACCTACTTAATTATCTT
TTTTATACCACATTAATTTTATTTTCATATTCCTCTCATCTCTATATTCC
TCTTCCATATATTTTTCTCCTCTTTTCCTATTTCTTACCAACAACTCTTT
TATCTATTTCTACTACTCTATCTTTCTTCTATCACTAATACTTTATTAGC
TTTTTATTTCTGTTCTCTTTCTGTCCCCCTTTCTTTTCCTCTATTAACCT
TCCTAAATATCTTTATTATATCTCTCATACCCTAATTTTACTCCACACCT
CTTCCTTCTTCTTCAACTCTTCTCTACTTTTCGCCTCCG
NNNCCCCTGAAGTGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGTCTTGATTAATTGCCTTCCCAGA
AATTATTTGGAGCCCAGCTTAACTGTGGCAATTTCTTGCAACCAAGGGTT
AAGGAGAAATTTTTGCAATATAATGAGGGCATTAAAGGAGAGTCATTTCT
TGGTGGAAGTATCTGAAAGAAGGGGCACACAGTGGGAGTGGCTCTTCAAG
AGCATCCTCTCTGGGAAGGGGCTTCCTTTCTCCACGTTCATTAGGGGTTC
CCGAGTCTCTAGCCCTTTAGCCACAATGCCCTGAGGACATGAAGGAAACA
AGGCACTTACCTCTGATCTTCCTGGGAGCTCCCAGGGTGATGCTGTTCTT
AACTGGAGGCTGGTCATCCTGGATCACCCAGCAGACAAAGTCAGTCTTAT
TCTTTATGGCATCCACCTGTAATGTGTGCTGTACAGAGTAAAAAAAATCA
GAGTTTCTGGTGGTCTGAGGAAGTTCCATGGTCGGGATCTTGTGCCCATT
CTTAGTCCAGATGAGGTCCATGTTTTGGGGATAGAAGTGGTTTACATGGC
AAGTCAGGTTCACTTTTTGATGCGCATGATCTTGGATCTCTGGGTCTTCA
GTGGTGATCTTCAGTGTTGGGATAACTAGACAGGAACAATAAGTAAGCCT
AGGGAAAAATCTGGGCATTGACTTATCCACCTGTCTCAGGGTCACTCAGA
TTGATTGATTGATTGATTTTTGATTGATTGATTGATTGATTAGTTGGTTG
GTTGGGTGGTGNAATCCCACAAATTTCNTGGTGACCTTGTAACTCTTATC
TACATCCGAATGATCCTGAACCTCCTATCCTTCTGGCCTCCCTACAAAAT
TTCCTCCATCCCCTCTTTTCTTCGCCCTAACACCCATCCACTCTCAATTT
GTGCTGCCTATATCCCTATGGCACCCGAACCCTCGTCATTTGTCTTTCTC
TTTACCCTCCTCCCCCTTTATAACTTCTCCTTCTTTCTCCTCTATTACTC
CTCTCTTTCCTTTCCTCATTTTTTTCTCTAACTACCCTTCTTTTTCTCTC
TTCCTTTAATCTCTTATCCCTCTCTTCCCCTTTCTCCCACCTTACTAATC
GCCCTTTCCTTCCTTTTCTTCCTTCTCTCTAACCCTATTTATCTTCATAC
TTATCTATCTCTCCCCTCTCTCACTACTTCCTATTCATCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_p05.g1 MSMg01no313_p05.g1 CHROMAT_FILE:
MSMg01no313_p05.g1 PHD_FILE: MSMg01no313_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:15 2005
         (294 letters)



>mm_chr2_129298311_129299004
          Length = 694

 Score =  530 bits (274), Expect = e-155
 Identities = 286/292 (97%), Gaps = 4/292 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtttctggtggtctgaggaagttccatggtcgggatcttgtgcccattcttagtccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagtttctggtggtctgaggaagttccatggtcgggatcttgtgcccattcttagtccag 260

                                                                       
Query: 61  atgaggtccatgttttggggatagaagtggtttacatggcaagtcaggttcactttttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaggtccatgttttggggatagaagtggtttacatggcaagtcaggttcactttttga 320

                                                                       
Query: 121 tgcgcatgatcttggatctctgggtcttcagtggtgatcttcagtgttgggataactaga 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcacatgatcttggatctctgggtcttcagtggtgatcttcagtgttgggataactaga 380

                                                                       
Query: 181 caggaacaataagtaagcctagggaaaaatctgggcattgacttatccacctgtctcagg 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 caggaacaataagtaagcctagggaaaaatcttggcattgacttatccacctgtctcagg 440

                                                               
Query: 241 gtcactcagattgattgattgattgatt----tttgattgattgattgattg 288
           ||||||||||||||||||||||||||||    ||||||||||||||||||||
Sbjct: 441 gtcactcagattgattgattgattgattgatttttgattgattgattgattg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)