BAC Information

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BAC

Clone NameMSMg01-315A18
Chromosome2 (Build37)
Map Location 154,831,424 - 155,003,367
singlet/doubletdoublet
Overlap genea, Ahcy, Itch, LOC100043877
Upstream genePsp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2
Downstream geneLOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315A18.T7 (MSMg01no315_a18.b1)MSMg01-315A18.TJ (MSMg01no315_a18.g1)
ACCAG435800AG435801
length734754
length of high quality
(start - end)		343 (69 - 411)593 (76 - 668)
definitionCHROMAT_FILE: MSMg01no315_a18.b1 PHD_FILE: MSMg01no315_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:24 2005CHROMAT_FILE: MSMg01no315_a18.g1 PHD_FILE: MSMg01no315_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,831,424 - 154,831,766)(155,002,847 - 155,003,367)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATACGAGAAGAGCGCGGAA
TTCGCCAATTACCTCTGGAGCAGGTGTTTGACTCCAGTGACTTTCCCCTT
CGCCTCGCTGTTACCAATCACCTGGCTAAGGGTCCTTTTGCTCTGACCAC
GTAAGCAAGCAGCTTAAGTGTTGGCCCTAGGTCACTGTTTCCACTACTGC
AATAGGCAGGTAAGAGCTGCGGCGGGGCCACACCCCCTTAAAGCAGACCT
CTGGCGTTGGGACCCTTAATCTTACCAACGCCATAACTCTTGTATAGGTC
TAGGACATCAACAGTCCTTAGTTCTTAACATTAGTATTACAGCTGTTGGC
CTGCGAGCCAATGGCCCTGAAGATGTGGGAAAGCTTCTAGAGGTCAGGAC
CTACAGTTTTTCCCCCCTGGTTCCTTACACCCTTTTGATCCTTCAGCCTG
GCCACCTCGGCCTCTCTCGCTTCCGCTTCCTTTCTTCCTCGCTGTTCCTG
CACTGTACAGTTGGCTGGCTGCTCTGCCACTGACTGCTCAGGGGTCACTG
CCACCGCCTCTTTTTGTTGCCACACTTGTTGTCTCTGCTGCTTCTTCTTT
CTTTGTGTAACAGAAAAAAGGAGCACTGGAGGGGACTTTTCTTATTTGAA
CGTATGGTGCACTAGGAGGCTAGGCAGCTCAGGAAAGCGTCTCCCAGACA
CTCACTATCTGAGCCGAAGTGTGAAGCCGATAAN

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGATAGCCAGGGCTACATAGTAA
AACTTGTCTCAAAGAAAAAAACGAAGGAAGAGAGAGAAAAGAAGAGAGAA
AGAACAGCTCTGGCAAGTTATCCTTGGACCTCCACATTATATGGCATATG
AAGGCATCCACACACACAAGTAAGTAAATGTAGTAAAAACCCTCTTTTAC
AAAGAGGATGGCTTCAAATTTAAGACCAATACAGGGTACAGAGCAAGTTC
AAAGCCAGCCATACAGTGAGGCCCTAAAATAACAGCAATAATAAACCTAA
GCCAGGCATAGTGGCTCACACATCTCAACGTTCAAGAGGCTGAGGCAAGA
GGATTACCTTGATTTCAAAGCCACCCTGAATTATAGTTTGGGACTGTTTC
AGTGTTGCCCCTCCCCAAAATAAAAATATCAGGTATATGGTCAATGATTA
ATGCTTGCCCAGTTTAACTCTATGAAGAGTTTTGGGGTTTTCTTTTTTTT
TTATTTTAAACATTATTATTATTTTTTTTTTTAAAGATTTATTTATTTAT
TACATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGACGTC
AGATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGA
ACTCGGGACCTTCGGAAGAGCAATCGGTGCTCTTAACCACTGAGCCATCT
CGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_a18.b1 MSMg01no315_a18.b1 CHROMAT_FILE:
MSMg01no315_a18.b1 PHD_FILE: MSMg01no315_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:24 2005
         (343 letters)



>mm_chr2_154831224_154831966
          Length = 743

 Score =  663 bits (343), Expect = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaggtgtttgactccagtgactttccccttcgcctcgctgttaccaatcacctggcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaggtgtttgactccagtgactttccccttcgcctcgctgttaccaatcacctggcta 260

                                                                       
Query: 61  agggtccttttgctctgaccacgtaagcaagcagcttaagtgttggccctaggtcactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggtccttttgctctgaccacgtaagcaagcagcttaagtgttggccctaggtcactgt 320

                                                                       
Query: 121 ttccactactgcaataggcaggtaagagctgcggcggggccacacccccttaaagcagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccactactgcaataggcaggtaagagctgcggcggggccacacccccttaaagcagac 380

                                                                       
Query: 181 ctctggcgttgggacccttaatcttaccaacgccataactcttgtataggtctaggacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctggcgttgggacccttaatcttaccaacgccataactcttgtataggtctaggacat 440

                                                                       
Query: 241 caacagtccttagttcttaacattagtattacagctgttggcctgcgagccaatggccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacagtccttagttcttaacattagtattacagctgttggcctgcgagccaatggccct 500

                                                      
Query: 301 gaagatgtgggaaagcttctagaggtcaggacctacagttttt 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagatgtgggaaagcttctagaggtcaggacctacagttttt 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no315_a18.g1 MSMg01no315_a18.g1 CHROMAT_FILE:
MSMg01no315_a18.g1 PHD_FILE: MSMg01no315_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:24 2005
         (593 letters)



>mm_chr2_155002847_155003839
          Length = 993

 Score =  978 bits (506), Expect = 0.0
 Identities = 518/522 (99%), Gaps = 1/522 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatagccagggctacatagtaaaacttgtctcaaagaaaaaaacgaaggaagagaga 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 521 caggatagccagggctacatagtaaaacttgtctcaaagaaaaaaaggaaggaagagaga 462

                                                                       
Query: 61  gaaaagaagagagaaagaacagctctggcaagttatccttggacctccacattatatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gaaaagaagagagaaagaacagctctggcaagttatccttggacctccacattatatggc 402

                                                                       
Query: 121 atatgaaggcatccacacacacaagtaagtaaatgtagtaaaaaccctcttttacaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atatgaaggcatccacacacacaagtaagtaaatgtagtaaaaaccctcttttacaaaga 342

                                                                       
Query: 181 ggatggcttcaaatttaagaccaatacagggtacagagcaagttcaaagccagccataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggatggcttcaaatttaagaccaatacagggtacagagcaagttcaaagccagccataca 282

                                                                       
Query: 241 gtgaggccctaaaataacagcaataataaacctaagccaggcatagtggctcacacatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtgaggccctaaaataacagcaataataaacctaagccaggcatagtggctcacacatct 222

                                                                       
Query: 301 caacgttcaagaggctgaggcaagaggattaccttgatttcaaagccaccctgaattata 360
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 221 caacgttcaagaggctgaggcaagaggattaccttgatttcaaagtcagcctgaattata 162

                                                                       
Query: 361 gtttgggactgtttcagtgttgcccctccccaaaataaaaatatcaggtatatggtcaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 gtttgggactgtttcagtgttgcccctccccaaaataaaaatatcaggtatatggtcaat 102

                                                                       
Query: 421 gattaatgcttgcccagtttaactctatgaagagttttggggttttcttttttttttatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 gattaatgcttgcccagtttaactctatgaagagttttggggttttcttttttttttatt 42

                                                     
Query: 481 ttaaacattattattatttttttttttaaagatttatttatt 522
           |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 41  ttaaacattattatta-ttttttttttaaagatttatttatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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