BAC Information

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BAC

Clone NameMSMg01-315F24
Chromosome2 (Build37)
Map Location 24,251,316 - 24,251,543
singlet/doubletsinglet
Overlap genePsd4
Upstream geneNxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn
Downstream genePax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315F24.T7 (MSMg01no315_f24.b1)MSMg01-315F24.TJ (MSMg01no315_f24.g1)
ACCAG436037AG436038
length725730
length of high quality
(start - end)
74 (240 - 313)236 (128 - 363)
definitionCHROMAT_FILE: MSMg01no315_f24.b1 PHD_FILE: MSMg01no315_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:49 2005CHROMAT_FILE: MSMg01no315_f24.g1 PHD_FILE: MSMg01no315_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCNGACCGCACGGAANNC
NGNCNGTTTTCANNCACCGAAGGCNNAAGAANNNNNNNCCCCAAGAGGNA
GNNAAGCNNNNCTGACACCCCCAACAAGNCNGGCNANGCANNNCAACCCC
CNGCCCCGANNGAGACCCNGAGAAACCAGGGNCNAAGAAAGCGNNGCAAA
CGGCGNNGAGGNNAANCNNCNNCCNGCNGNCNNCNCCNNCAGGCACCATT
TTAAGATCACGATGGAAAACAATGAAAAAAAAAACATTGTGTATGGAAGT
GATGTTGAGATGGATCTTTTTTTTTGCTGGGCCACCCGCANCNNCAGCNA
CGNNNNCNAAACACCCACCCCCCACACACANCNCAGGNANGGCNCNAAGC
ACACAAGAAGGGGCCCCCACACCACNAGGCCAAAAANNCCGGGAGGGGGG
AGACCACNAGCACAAACAAGAGCAGCGGGGCCCCAGNACAAACGAACCGG
GGAGCCGCNNNNAACNCAGCNCANCNGGNNAGCCCCCAGGANCAGNAAAC
ACCCCAGGNAGCCCNAGGNCCCCAGAGACNNNCNACAAAGAAAGCCCGCA
CCGAAAGAAAACCAAAAAAAGCCGCCANGCCGGAGACACAAACAACCGGC
CCNCATTTTTCTATGGGTCCCGGAGTTAGGTAATCTCTCGCCTATAAACC
CCTTCGTCATATTGCGCTTGGAATT
NCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAAAAATTCTCCTTATCTCTAAAGCAGAGTATTC
CTGGGAAAACTGTCCCCCCTTCCTCTCTCACATAACTTGTGACAAACCCT
GATTGATATCAAGGCTCCTATGCCATTGTCCTGACAAGGGTCTGATCTAC
CGACCCTGCACAGCAGGAAAATGAAGGATCCTGAGCTAAAAGAAACAAGA
TGTTCAAATCTCTCAAAAGAGTGGACTCCTAAAATGGAGAGCTCTCTGGT
GTGACAAAGGCTAGGTTACTCTGTGACTTCTGGAGATGCCTAGGAGGTAG
GAGAGAAGATCCCAGATTGTCTTGCAACGCCATGAAGGGAGACGATGCCT
GTTCTCTGAGCCAGTCTATCCCCCCCCACCTCCTTGAAGCTGGTGACAGA
GATATTCCTGGGCTCACATGCATCTGAGTTCCAAATGACATTAATGTACT
GATAAAATTTCCCATTATTCTTAAGTCTATATGAATCAATCTTTGTCTGT
GAGAGTATATATATAGAGTATCTCTTACTAAACCCAGGGCTTGCTACTTT
GGCTAGATTGCCTGGCCATTGAGATCCTGGGATCCCCATTTCCACTCTTT
TCCCTGCAGTGTTGGGTTTCAGGTGTACATTGACACACCCAGCTTTTATA
TGGGTTCCAGGGACCTAAACTCAGATCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_f24.g1 MSMg01no315_f24.g1 CHROMAT_FILE:
MSMg01no315_f24.g1 PHD_FILE: MSMg01no315_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:49 2005
         (236 letters)



>mm_chr2_24251136_24251771
          Length = 636

 Score =  383 bits (198), Expect = e-111
 Identities = 223/236 (94%), Gaps = 8/236 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacataacttgtgacaaaccctgattgatatcaaggctcctatgccattgtcctgacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tcacataacttgtgacaaaccctgattgatatcaaggctcctatgccattgtcctgacaa 349

                                                                       
Query: 61  gggtctgatctaccgaccctgcacagcaggaaaatgaaggatcctgagctaaaagaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gggtctgatctaccgaccctgcacagcaggaaaatgaaggatcctgagctaaaagaaaca 289

                                                                       
Query: 121 agatgttcaaatctctcaaaagagtggactcctaaaatggagagctctctggtgtgacaa 180
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 288 agatgttcaaatctctcaaaagagtggactcctaaaatagacagctctctggtgtgacaa 229

                                                                   
Query: 181 aggctaggttactctgtgacttctggagatgcctaggaggtaggagagaagatccc 236
           ||| |||||||||||||||| |||||||        |||||||||| |||||||||
Sbjct: 228 aggttaggttactctgtgacatctggag--------gaggtaggagtgaagatccc 181


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)