BAC Information

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BAC

Clone NameMSMg01-315I12
Chromosome2 (Build37)
Map Location 146,074,307 - 146,074,647
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
Downstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315I12.T7 (MSMg01no315_i12.b1)MSMg01-315I12.TJ (MSMg01no315_i12.g1)
ACCAG436149AG436150
length1,475733
length of high quality
(start - end)
---342 (75 - 416)
definitionCHROMAT_FILE: MSMg01no315_i12.b1 PHD_FILE: MSMg01no315_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:01 2005CHROMAT_FILE: MSMg01no315_i12.g1 PHD_FILE: MSMg01no315_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCATCACAAAAATTTNGGCGGGACTGATAGAAGCGAGCTCTCCCTACA
TTTCTCAGAAGGAGGAGGCGGCGCGAAGAGCGTATTGGCGCGTCTCTCTC
TGAATGCACAGACATCTGCAATATACATTAGACACATCCGGACCCGCCTA
ACGANCGCACACGACACCGCTCTACTGTTAACGCGCCACGTCGGCGACAT
GATAGGGAGAGGTGGGATGATCGTAAATCATTTCTCTACCTCTGCTCGAG
TTGTCTGTGCATTTATCCGTTCTTCTTCTTNCGCACTCCGTTGTCTCAGA
GCGGCGGCCGCAGTGTATTCGTAGACTTATAGCTCGCGACGCCGTATCAC
ACCAATGAAATNATAAACACAGATATGCGCCCGCGATTAAGTCGCACGTC
ATCATCGCGATGGTACAGCGAGTAGGCAGACGAGAGTGCGGCCTGGCGCA
GGATGCGAGCGTTTGAGTGGAGAGGCAGGGCGCTAAGCNTAGCAGTAGCA
GACATCTCGCCATTCTCGTCGCCGATTACCTCGTGTCTATAATTCTCGTT
GTCGTATATACTGTGTTGCAATGCTGTCGCACCACTTAGCAGTTTTACCA
TCGTATCTATACCTCAACATACTTTACATATCGCACAACATACTACATCT
ATTATTTCCATTTATGCGCTATCACGCTATGCGCTTTCGAGTTGTTCGAC
GCATGCTTAGTTAAACGAGCTGTTACCGCGACTTCCACTGCGGAATTTCG
CATCGAGTCGGCCGATTGAACCTATGTTGCACGTGATCTTATATATAGTA
CACACCATTATGTGGATAGTGGAACGTAGTCTAGGCACTCGTGTTGTTGT
ATCTCTGTTTGTATACACGCTCTATACTCGGCGACCGACAATCACAGAAG
ATGGCGTAGAATGTGAGCGCCAGAAGCCGACGGTCTATTAATCTCGACAT
ATAATCACTACACGCTATACATATGCTCGCATTAACATCATCTATACGTG
CNTAGTACGCGATCGTTCTCGATAGTTGCNAACACGCTACAAACGACTGN
GCGNGATTGCGCGCCACACCTCCATTCTCATCAATACAACATCATCATGT
AGTGACTTGTGATATAACGGATATCTTCTCTATANTACATTTATAGCCTA
CTATATNTCTAGAAGATTNGNTACACTGTGAATATCTATGTTGCCTATGT
GTCGCCACGACNCTAGAGATCATTGCGTACGTATGTGATCTGAGTCATAG
CCGACGAACCGCCTCAGATGCTATATACAGNGTGNACGCACTGTGCTGTG
TGACGTGATGAGGATAGAAGTAAGTAGTGTCACACTATGGTCNATGATAC
GCACCAGTAGCGATGCATNATATATAGCGACATCTACATCAACATTGTTG
TTAGCCCNACCATCACACANTATAACACACACGATGCCATATGGTCTCTG
TATTATATAGACGTGACGTATAGTG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGATTAGCTAGGCCCCTATTGAGGC
TGGACATTAGCAGAGACACACCAACATTGTGCACACTGCTATAACTGTAA
ACTCAGACTTTCTGCTGATCTCATCTGCCAAGGTTGGCACAGCAATTGGA
CATTTTTTTTTCTAACACCATTTGGGCATTCTTTCTTTTACGCCTCTCTG
AAGGAAGTATGTATGTACTTCTATGAAGTTTGATTTTCTATTAAAGAACA
CTCAGGCCCCAAGTTTTGAGTACTTGGGCTGGGAAGCCATGATCCTTAAC
CAGCCCTGGATGACCAAATGGCAGTTCCTTGTCCTACTATGACTTGGCTT
CTTCTCCGTGTGAGGCCCCCCCCACCTCTGTCTGGGCTAAGGACCTAGTA
GGTCCTTTGACATTAATGCAATTTTCTAGATTTCTTATTTTTCCAGTGTG
CCATACTGCAGGGCTCCACTTCATCTAATGGAAGACGGCAAGCAGAGAGT
GCCTGTGTGCATGGGTCTACCTTGAGTGGAGCGCCTCAGGTTTTCAGAGC
CACGCCCCTGATGCCCTCCCAAGTGAGAAGAGGCTCTTTATAACGGGGAT
CCTTGATCTCACTTTCCTGCAGCCCGCCACCCCCACCCCTACCCCCACCC
CGGCCCTGGTTATGCTATGCATACAGGCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_i12.g1 MSMg01no315_i12.g1 CHROMAT_FILE:
MSMg01no315_i12.g1 PHD_FILE: MSMg01no315_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:01 2005
         (342 letters)



>mm_chr2_146074107_146074847
          Length = 741

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%), Gaps = 1/342 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagattagctaggcccctattgaggctggacattagcagagacacaccaacattgtgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 tagattagctaggcccctattgaggctggacattagcagagacacaa-aacattgtgcac 259

                                                                       
Query: 61  actgctataactgtaaactcagactttctgctgatctcatctgccaaggttggcacagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 actgctataactgtaaactcagactttctgctgatctcatctgccaaggttggcacagca 319

                                                                       
Query: 121 attggacatttttttttctaacaccatttgggcattctttcttttacgcctctctgaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attggacatttttttttctaacaccatttgggcattctttcttttacgcctctctgaagg 379

                                                                       
Query: 181 aagtatgtatgtacttctatgaagtttgattttctattaaagaacactcaggccccaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagtatgtatgtacttctatgaagtttgattttctattaaagaacactcaggccccaagt 439

                                                                       
Query: 241 tttgagtacttgggctgggaagccatgatccttaaccagccctggatgaccaaatggcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttgagtacttgggctgggaagccatgatccttaaccagccctggatgaccaaatggcag 499

                                                     
Query: 301 ttccttgtcctactatgacttggcttcttctccgtgtgaggc 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttccttgtcctactatgacttggcttcttctccgtgtgaggc 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 741
Length adjustment: 9
Effective length of query: 333
Effective length of database: 732
Effective search space:   243756
Effective search space used:   243756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)