NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATGATGGCGACAAAGTCAGGTAGATCCTGCGAGCTGTCTATCA
AGCATCATAGATGGAAAGGAATGATTCAGATTCCCCAAGAGTCCTTGTTT
TAAAAGGTAATATGGAACATGACAAGGAAGATCCCATCCTCCTCTAGAGT
CCACATAATTGCCTATGGGTACACACACCTGCAGATGCGCGCGCGCACAC
ACACACACACACACACACACACATATATACATACCACACCATACACACAT
CATATTAGGCTTTCAATTTTATCACTACCTTATAATTAGCCTTATCATTA
TGCTATATCATGACTATAACTTTGTATTTTTAATTGTTCCATAGCATTCC
AGTACAACATTTCAGTACAGAGCATTTCATGTAATGAGATATTTTTTCCA
ACCACATTTTAAACCATAAGTAGTATGGTATGGTTTGTTTGTTTGTTTGT
TTGCTTTTAGAAACCAGTGGCATGGTTCAAAGGACATGTCTAACATCCAT
GAGGACCTGGGTTCAATTCTCTGGTACTATCAACAGAACAGAACAAAAAC
AAAAATGTGTTTTATTGCATAAAGGATGGAAAAATACATATTTCTTTATG
TCTAGTATTTTTTTCATCTTCTTCCTATAATGTTGACATATTTGTCACAA
AGTGAGATCATAAATGATACCTGCCTACTN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGATGTATACCGAATGGCTG
AGAAGCACCTAAAAAAAGTTCAACATTCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACAACAGTCAGAATGGCTAAGATC
AAAAACTCAGGTAACAGCAGATGCTGGCGAGGATGTGGAGAAATAGAAAC
ACTCCTCTATTGTTGGTGGGAATGCAAGCTGGTACAACCACTCTGGAAAT
CAGTTTGGTGGTTCCTCAGAAAATTGGACATACTTCTACCAGAAGATCCA
GCAATACCACTCCTGGGCATATACTCAGAAAATGCTCCAATATGTAATAA
GAACACATGCTCCACTATATTCATAGCAGCCTTATTTATAATAGTCAGAA
GCTGGAAAGAACCCAGATGTCCCTCAATAGAAGAATGGATAAAAAAATGT
GGTACAATTACACAATGGAGTACTACATAGCTATTAAAAACAATGAATTT
ATGCCGTTCTTATACAAATGGATGGACCTGGATGATATCTTTCTGAGTGA
CGTAACCCAATTAGAAAAGAACACAGATGGTATGCACTCACTGATAAGTG
GATATTAATTAGCCCAGAAGCTCAGAATCCTTCTCAGAAGGGGGAACAAA
ATACCCATGGAAGGAGTTACAGAGACAAAGTTTG

Query= MSMg01no316_a07.b1 MSMg01no316_a07.b1 CHROMAT_FILE:
MSMg01no316_a07.b1 PHD_FILE: MSMg01no316_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:40 2005
         (681 letters)



>mm_chr2_12695182_12696262
          Length = 1081

 Score = 1187 bits (614), Expect = 0.0
 Identities = 663/684 (96%), Gaps = 12/684 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatga-tggcgacaaagtcaggtagatcctgcgagctgtctatcaagcatcata 63
           ||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 199 gaattccatgattggagacagagtcaggtagatcctgcaagctgtctatcaagcatcata 258

                                                                       
Query: 64  gatggaaaggaatgattcagattccccaagagtccttgttttaaaaggtaatatggaaca 123
           ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 259 gatgg-aaggaatgattcagattccccgagagtccttgttttaaaaggtaatatggaaca 317

                                                                       
Query: 124 tgacaaggaagatcccatcctcctctagagtccacataattgcctatgggtacacacacc 183
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgacaaggaagatcccatcatcctctagagtccacataattgcctatgggtacacacacc 377

                                                                       
Query: 184 tgcagatgcgcgcgcgcacacacacacacacacacacacacac------atatatacata 237
           ||||||||| | | | |||||||||||||||||||||||||||      |||||||||||
Sbjct: 378 tgcagatgcacacacacacacacacacacacacacacacacacacatatatatatacata 437

                                                                       
Query: 238 ccacaccatacacacatcatattaggctttcaattttatcactaccttataattagcctt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ccacaccatacacacatcatattaggctttcaattttatcactaccttataattagcctt 497

                                                                       
Query: 298 atcattatgctatatcatgactataactttgtatttttaattgttccatagcattccagt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atcattatgctatatcatgactataactttgtatttttaattgttccatagcattccagt 557

                                                                       
Query: 358 acaacatttcagtacagagcatttcatgtaatgagatattttttccaaccacattttaaa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acaacatttcagtacagagcatttcatgtaatgagatattttttccaaccacattttaaa 617

                                                                       
Query: 418 ccataagtagtatggtatggtttgtttgtttgtttgtttgcttttagaaaccagtggcat 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ccataagtagtatggtatggtttgtttgtttgtttgtttgcttttagaaaccagtggcat 677

                                                                       
Query: 478 ggttcaaaggacatgtctaacatccatgaggacctgggttcaattctctggtactatcaa 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggttcaaaggacatgtctaacatccatgaggacctgggttcaattctctggtactatcaa 737

                                                                       
Query: 538 cagaacagaacaaaaacaaaaatgtgttttattgcataaaggatggaaaaatacatattt 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cagaacagaacaaaaacaaaaatgtgttttattgcataaaggatggaaaaatacatattt 797

                                                                       
Query: 598 ctttatgtctagtatttttttcatcttcttcctataatgttgacatatttgtcacaaagt 657
           |||||||||||||||||||| |||||||   |||||||||||||||||||||||||||||
Sbjct: 798 ctttatgtctagtatttttt-catcttc---ctataatgttgacatatttgtcacaaagt 853

                                   
Query: 658 gagatcataaatgatacctgccta 681
           ||||||||||||||||||||||||
Sbjct: 854 gagatcataaatgatacctgccta 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)