BAC Information

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BAC

Clone NameMSMg01-316F24
Chromosome2 (Build37)
Map Location 51,030,229 - 51,195,064
singlet/doubletdoublet
Overlap geneLOC666802
Upstream geneLypd6, 2010311D03Rik, LOC666781, LOC227885, Rnd3
Downstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316F24.T7 (MSMg01no316_f24.b1)MSMg01-316F24.TJ (MSMg01no316_f24.g1)
ACCAG436737AG436738
length720730
length of high quality
(start - end)		636 (85 - 720)245 (78 - 322)
definitionCHROMAT_FILE: MSMg01no316_f24.b1 PHD_FILE: MSMg01no316_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:06 2005CHROMAT_FILE: MSMg01no316_f24.g1 PHD_FILE: MSMg01no316_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,030,229 - 51,030,863)(51,194,821 - 51,195,064)
sequence
CCGNNNNNCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCCAAAGTGTATCTCACATGAGATGACGTGGATA
ATAACATTATTTCCTTTGTGAACCTCTTCCCACACCCCTTACCACTTCCT
TACCTGTCTTGAGGCTTGTTGGGACATGTTCATAAACATTTATATGAATA
AACGTAATTAAAATACATATCCCAGTCTTTTAGCAGTTAAATATATTGAC
TATTATTCACCCTTTAGAAGAAATTCCTTAAAGATCTAAAGAGTGACAAC
CTCATCCAGCTTTCATAGCCTACCTTGATGCACATGACTATATTTGGAAG
CCTAGTCTGACTTTCAACTTGATATATAGGGATAGAAAATGAAACTCAAA
TAAAGGTACCTTGAAAGAAGATCTTCATTAAATGATTTTCAAATTAGAAA
ATTACATACTCACACATCACGTGTACACATAAAAAGATGAGATATACATG
CGTCTGCATGTTTATATGGGGCTGTGCAGTCTCTGGGATATATAAATATG
CATAAGTTTCTCATACAACATAATTAGAGAAAATTACATATCTAGTCAAT
TAGTCTTCAGAGCATCTTTCTCCCTCCTTGCCCTCAGTGCCCCTGATAAG
CCCGCTTTCGCTTTCTGCGGTTGGGTTCACCCACATGCCTCCTCTGGTTT
CTCCCCTGATACTTCAAACN

NCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATAATGAATTTCCTAAATGAAT
CTAGCTACTTGCTCAGAGATAGACCCGAAGATAGGCAGTCCTGAGGCATG
TTTTGCATAGGTGTATCAGAGGAATGCTCCTGTTGGGAATTTTGTATAAC
ACATTGAAATGACAGAGCAAAGAAATGTTCAGAAAATATCAGAGGATCAA
TATGGAAACACATCTCCTAGAGGGAGTATGTAACCATCAGAATTTGAGAG
GTAATTGGGGAATTATCCTTCTTATTTAGATAGAAACATATATTTTTTTA
AAAATCAGTCCTATTTTTTTTACACTCCCTCACCAGGCTTGAGGAAGCAT
GCCATTGATGCCAAATTTCCCCCCCCTTTGACCAGCCCTTTAATGCATAT
CCTATTGAATAAGAAGCCTCTGAGGTTTTGTGTTAGGTGTCTGCAAAGGC
GCGTTCACATGCTTCCTGTATATCACCTTTTGCTCTTTGGAGATATTATT
AAAAATGCTCCTTATATATCTCCCAGTGCTAATCATCCTTCTTATAGTAA
CAAGCATTTGTGCACTATCGCAGCAGCCTCTCTACTTTCCTTTCCCAGCC
TAGTTTTTATGCTTTTGTGTTCCACTCACTATATATTTTTACTAAAACTT
TCAGTACACATTTCTCCGCCCCCCTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_f24.b1 MSMg01no316_f24.b1 CHROMAT_FILE:
MSMg01no316_f24.b1 PHD_FILE: MSMg01no316_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:06 2005
         (636 letters)



>mm_chr2_51030029_51031064
          Length = 1036

 Score = 1212 bits (627), Expect = 0.0
 Identities = 633/635 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagatgacgtggataataacattatttcctttgtgaacctcttcccacaccccttacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 tgagatgacgtggataataacattatttcctttgtgaacctcttcccacaggccttacca 260

                                                                       
Query: 61  cttccttacctgtcttgaggcttgttgggacatgttcataaacatttatatgaataaacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttccttacctgtcttgaggcttgttgggacatgttcataaacatttatatgaataaacg 320

                                                                       
Query: 121 taattaaaatacatatcccagtcttttagcagttaaatatattgactattattcaccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattaaaatacatatcccagtcttttagcagttaaatatattgactattattcaccctt 380

                                                                       
Query: 181 tagaagaaattccttaaagatctaaagagtgacaacctcatccagctttcatagcctacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaagaaattccttaaagatctaaagagtgacaacctcatccagctttcatagcctacc 440

                                                                       
Query: 241 ttgatgcacatgactatatttggaagcctagtctgactttcaacttgatatatagggata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgatgcacatgactatatttggaagcctagtctgactttcaacttgatatatagggata 500

                                                                       
Query: 301 gaaaatgaaactcaaataaaggtaccttgaaagaagatcttcattaaatgattttcaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaatgaaactcaaataaaggtaccttgaaagaagatcttcattaaatgattttcaaat 560

                                                                       
Query: 361 tagaaaattacatactcacacatcacgtgtacacataaaaagatgagatatacatgcgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagaaaattacatactcacacatcacgtgtacacataaaaagatgagatatacatgcgtc 620

                                                                       
Query: 421 tgcatgtttatatggggctgtgcagtctctgggatatataaatatgcataagtttctcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcatgtttatatggggctgtgcagtctctgggatatataaatatgcataagtttctcat 680

                                                                       
Query: 481 acaacataattagagaaaattacatatctagtcaattagtcttcagagcatctttctccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaacataattagagaaaattacatatctagtcaattagtcttcagagcatctttctccc 740

                                                                       
Query: 541 tccttgccctcagtgcccctgataagcccgctttcgctttctgcggttgggttcacccac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccttgccctcagtgcccctgataagcccgctttcgctttctgcggttgggttcacccac 800

                                              
Query: 601 atgcctcctctggtttctcccctgatacttcaaac 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 801 atgcctcctctggtttctcccctgatacttcaaac 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no316_f24.g1 MSMg01no316_f24.g1 CHROMAT_FILE:
MSMg01no316_f24.g1 PHD_FILE: MSMg01no316_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:06 2005
         (245 letters)



>mm_chr2_51194621_51195265
          Length = 645

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataatgaatttcctaaatgaatctagctacttgctcagagatagacccgaagataggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 444 cataatgaatttcctaaatgaatctagctacttgctcagagatagagaggaagataggca 385

                                                                       
Query: 61  gtcctgaggcatgttttgcataggtgtatcagaggaatgctcctgttgggaattttgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtcctgaggcatgttttgcataggtgtatcagaggaatgctcctgttgggaattttgtat 325

                                                                       
Query: 121 aacacattgaaatgacagagcaaagaaatgttcagaaaatatcagaggatcaatatggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacacattgaaatgacagagcaaagaaatgttcagaaaatatcagaggatcaatatggaa 265

                                                                       
Query: 181 acacatctcctagagggagtatgtaaccatcagaatttgagaggtaattggggaattatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acacatctcctagagggagtatgtaaccatcagaatttgagaggtaattggggaattatc 205

               
Query: 241 cttc 244
           ||||
Sbjct: 204 cttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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