Query= MSMg01no316_l03.b1 MSMg01no316_l03.b1 CHROMAT_FILE:
MSMg01no316_l03.b1 PHD_FILE: MSMg01no316_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:31 2005
(540 letters)
>mm_chr2_162569763_162570705
Length = 943
Score = 1027 bits (531), Expect = 0.0
Identities = 539/543 (99%), Gaps = 3/543 (0%)
Strand = Plus / Plus
Query: 1 tgagatcaagggttcaagtgcacaaactgggctgagggtatagatgaggggggagttgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagatcaagggttcaagtgcacaaactgggctgagggtatagatgaggggggagttgac 260
Query: 61 catgaccttagaataatgctgaaaaaaacagagtcagtgctgccatttggatataagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgaccttagaataatgctgaaaaaaacagagtcagtgctgccatttggatataagcca 320
Query: 121 ctcctccagaggcttaagtcttataaaggcttgctcagcagctattagatccaatcattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcctccagaggcttaagtcttataaaggcttgctcagcagctattagatccaatcattg 380
Query: 181 agtggtgactgaatcatgactactccactttatcagtggatgaattcattgatagattta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggtgactgaatcatgactactccactttatcagtggatgaattcattgatagattta 440
Query: 241 ctctaagagactcccttgtcccaaaccgcttcctgtctctagctctctatcttccgccca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ctctaagagactcccttgtcccaaaccgcttcctgtctctagctctctatcttctgccca 500
Query: 301 cgaagaggctaagcacttttctccaccacatgccgcccccccc---ataatgcttgacca 357
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 cgaagaggctaagcacttttctccaccacatgccgcccccccccccataatgcttgacca 560
Query: 358 ttcctacagatgtccagaaacaacagagccaagtgactgtagcatgaaacctctgaaagc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcctacagatgtccagaaacaacagagccaagtgactgtagcatgaaacctctgaaagc 620
Query: 418 atgagccaaatacgccttccctcctttaaacagtttcttttgggtattggtcatagagat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgagccaaatacgccttccctcctttaaacagtttcttttgggtattggtcatagagat 680
Query: 478 ggaaatgtttgttactaacatgcaggctcgaatctcaggacagccaacagaagagaactt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaaatgtttgttactaacatgcaggctcgaatctcaggacagccaacagaagagaactt 740
Query: 538 aac 540
|||
Sbjct: 741 aac 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 943
Length adjustment: 10
Effective length of query: 530
Effective length of database: 933
Effective search space: 494490
Effective search space used: 494490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_l03.g1 MSMg01no316_l03.g1 CHROMAT_FILE:
MSMg01no316_l03.g1 PHD_FILE: MSMg01no316_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:31 2005
(645 letters)
>mm_chr2_162743006_162744051
Length = 1046
Score = 1172 bits (606), Expect = 0.0
Identities = 636/646 (98%), Gaps = 1/646 (0%)
Strand = Plus / Minus
Query: 1 ctcctgcctctgcctcccaagtgctgggattaaaggcgtgcgccaccactgcccggctgc 60
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 666 ctcctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccaccgcccggctgc 607
Query: 61 acaatggtatttttgcctcacgagcaccaaagcctttcctgtaggaacatgcagatctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acaatggtatttttgcctcacgagcaccaaagcctttcctgtaggaacatgcagatctgc 547
Query: 121 tgcatctgtcgggagcacgcactgtctgccccaacagtgaagcattttggggtaagcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tgcatctgtcgggagcacgcactgtctgccccaacagtgaagcattttggggtaagcttc 487
Query: 181 cacaggttggatggtcttaaggaagtagttgtatttctagctgccccctgccccgcctcc 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cataggttggatggtcttaaggaagtagttgtatttctagctgccccctgccccgcctcc 427
Query: 241 catcattgttaaaccctgcttggaaatcatgactgtgttagtaatcaccaaacagggt-g 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 426 catcattgttaaaccctgcttggaaatcatgactgtgttagtaatcaccaaacagggtgg 367
Query: 300 attaaagacgatgtcaggttaattagggtggcttgcaagaggcacaacattcctttttcc 359
||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| ||
Sbjct: 366 attaaagacgatgtcgggttaattagggtggcttgcaagaggcaaaatattccttttccc 307
Query: 360 cccctccacagagagagaagaaggccaggcatgtaaaggatagatgaatgtcttggtttg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cccctccacagagagagaagaaggccaggcatgtaaaggatagatgaatgtcttggtttg 247
Query: 420 gattgttctggaagtagatcctgagagtagggattcaagcacattcggagatcttggaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gattgttctggaagtagatcctgagagtagggattcaagcacattcggagatcttggaag 187
Query: 480 tgtcccaagaaacctgtaggttatggcagtaagatggagaggggacccagcatgtgggtg 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tgccccaagaaacctgtaggttatggcagtaagatggagaggggacccagcatgtgggtg 127
Query: 540 tgttatcaaagccacttacactgctggtaactgaaatctcacctgggaactctgggaaat 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tgttatcaaagccacttacactgctggtaactgaaatctcacctgggaactctgggaaaa 67
Query: 600 gaatcgtggaattatatctggaaatcctcccatgtgagggacaagg 645
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gaatcgtggaattatatctggaaatcctcccatgtgagggacaagg 21
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
