BAC Information

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BAC

Clone NameMSMg01-316M24
Chromosome2 (Build37)
Map Location 154,326,473 - 154,511,841
singlet/doubletdoublet
Overlap geneCbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b
Upstream geneCommd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1
Downstream geneLOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316M24.T7 (MSMg01no316_m24.b1)MSMg01-316M24.TJ (MSMg01no316_m24.g1)
ACCAG437061AG437062
length722720
length of high quality
(start - end)		651 (72 - 722)648 (73 - 720)
definitionCHROMAT_FILE: MSMg01no316_m24.b1 PHD_FILE: MSMg01no316_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:40 2005CHROMAT_FILE: MSMg01no316_m24.g1 PHD_FILE: MSMg01no316_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,326,473 - 154,327,126)(154,511,194 - 154,511,841)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATACGCGGAAT
TCTAGGGCAGTTTGCAAGAGGTGGCACACACCTTTAATCCTAGCACTTGG
GAAGCAGAGGCAGTTGGATTTCTGAGTTCGAGGCCAGCCTGGACTACAGA
GTGAGTTCCAGGATAGCCAGGGCTATACAGAGAAACCCTGACTCAAAAAA
AAAAAATTCTAGGGCAACCCCTTGGAATGGCTCATACCTTTATTCTTGGA
GTGTGGGAGGCAGAAGAAACAAGTGGCTTACAGTGAGTAAAAATGTAGCC
GGGGAATGGTAGCACATGCCTTTAATACCAGGATTCAGGAGGCAGAAGTA
GGTGGATGTCTGAATTTGTGAGCAGCCTGTTCTACAGACTAGTTCTAGGA
CAGCCAAGGTTACACAAAGAAACCTTGTCTCAAAACAACAACAACCGTGA
AAATGTGATGATACAGTTTTATTTAAAAGGCTGTGAAAAGCTCATCTATA
CCGTTCTTGTGAGGCACTTCAAAGAGGGTAGCTCTGATCAGGAGGGGTCT
TTAAGTAGAAGTAAAGAAATGAAAGATGATTGTAGCTACGTTTCTAGGTG
GGTGAGGTTAAGTGTGGAGCTCTCCTTTCCAGTAGTTCTAGTTCTTTTTG
AATGGAAGTAGAAAATTGTTCTCCCTTTTTTCCCTCAGCCCATTAGTTTT
ATATCAATTCAGTACCATTTTN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAAAAACTCAATAGTCCAGGTTGGCCCTGAACTC
TCAGCAATCACCCTGTCTCACACTCTCGGGTGCTGACGGGATTACAGGTA
TGAGCCACCATACCCAGCTCTAACCAGATCTCCAACCAGACTTGCTTTTC
TACATGGCCAAAGTCCACAAAGCCCAAACCCAGTATTTACATAAACAAAT
GCAAACTGGCTTGGGGGCCAAACTCCCCAAAATCTGGATGGTTGGATTAA
AGAAACAAATTGGAAGCTAATGAACAGCTGTTCATCAAAGCCGAATCTTC
AGAGAAGGCCATCTTCTGCTACAGAACTTAGGGTCCTATATAAACACATT
GGCTCTAGTAGCCTAAACTCAACCCTACCAACAGAAGTTTAAGAGGTTGC
TTTTAGATGAGGAAAAAAAAGTCTGTGAAATCTCCATATTTAATTATGCC
TTTGCCAGTTCCAAGAGAGTAATTACAGCAGCAATTACAGAATCTAATGA
CCAGCTTTATTGGCTCTGAAAGCCAAAGCAAAAGCAACTGCAACCATGTT
GAAATAAACATTGGTCTCCAGACAGTTGCTTCATTAGACCCTCCTAACAG
CTATTCAAAAGACAGCATGCAAGAGATACCCTAAGAAGCAGAGCGACTCA
GGGAGAAACTTTCACCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_m24.b1 MSMg01no316_m24.b1 CHROMAT_FILE:
MSMg01no316_m24.b1 PHD_FILE: MSMg01no316_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:40 2005
         (651 letters)



>mm_chr2_154326277_154327327
          Length = 1051

 Score = 1222 bits (632), Expect = 0.0
 Identities = 647/654 (98%), Gaps = 4/654 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcacacacctttaatcctagcacttgggaagcagaggcagttggatttctgagttcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tggcacacacctttaatcctagcacttgggaagcagaggcagttggatttctgagttcga 256

                                                                       
Query: 61  ggccagcctggactacagagtgagttccaggatagccagggctatacagagaaaccctga 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggccagcctggactacagagtgaattccaggatagccagggctatacagagaaaccctga 316

                                                                       
Query: 121 ctcaaaaaaaaaaaa----ttctagggcaaccccttggaatggctcatacctttattctt 176
           |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctcaaaaaaaaaaaaaaaattctagggcaaccccttggaatggctcatacctttattctt 376

                                                                       
Query: 177 ggagtgtgggaggcagaagaaacaagtggcttacagtgagtaaaaatgtagccggggaat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggagtgtgggaggcagaagaaacaagtggcttacagtgagtaaaaatgtagccggggaat 436

                                                                       
Query: 237 ggtagcacatgcctttaataccaggattcaggaggcagaagtaggtggatgtctgaattt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggtagcacatgcctttaataccaggattcaggaggcagaagtaggtggatgtctgaattt 496

                                                                       
Query: 297 gtgagcagcctgttctacagactagttctaggacagccaaggttacacaaagaaaccttg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtgagcagcctgttctacagactagttctaggacagccaaggttacacaaagaaaccttg 556

                                                                       
Query: 357 tctcaaaacaacaacaaccgtgaaaatgtgatgatacagttttatttaaaaggctgtgaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tctcaaaacaacaacaaccgtgaaaatgtgatgatacagttttatttaaaaggctgtgaa 616

                                                                       
Query: 417 aagctcatctataccgttcttgtgaggcacttcaaagagggtagctctgatcaggagggg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 617 aagctcatctataccgttcttgtgaggcacttcaaagagggtagctctgatcaggaggga 676

                                                                       
Query: 477 tctttaagtagaagtaaagaaatgaaagatgattgtagctacgtttctaggtgggtgagg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctttaagtagaagtaaagaaatgaaagatgattgtagctacgtttctaggtgggtgagg 736

                                                                       
Query: 537 ttaagtgtggagctctcctttccagtagttctagttctttttgaatggaagtagaaaatt 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 737 ttaagtgtggagctctcctttccagtagttctagttctttttgaatggaagaagaaaatt 796

                                                                 
Query: 597 gttctcccttttttccctcagcccattagttttatatcaattcagtaccatttt 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gttctcccttttttccctcagcccattagttttatatcaattcagtaccatttt 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no316_m24.g1 MSMg01no316_m24.g1 CHROMAT_FILE:
MSMg01no316_m24.g1 PHD_FILE: MSMg01no316_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:40 2005
         (648 letters)



>mm_chr2_154510897_154511944
          Length = 1048

 Score = 1207 bits (624), Expect = 0.0
 Identities = 642/648 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaatagtccaggttggccctgaactctcagcaatcaccctgtctcacactctcgggtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 945 ctcaatagtccaggttggccctgaactctcagcaatcaccctgtctcagactctcgggtg 886

                                                                       
Query: 61  ctgacgggattacaggtatgagccaccatacccagctctaaccagatctccaaccagact 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 885 ctgacgggattacaggtatgagccatcatacccagctctaaccagatctccaaccagact 826

                                                                       
Query: 121 tgcttttctacatggccaaagtccacaaagcccaaacccagtatttacataaacaaatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tgcttttctacatggccaaagtccacaaagcccaaacccagtatttacataaacaaatgc 766

                                                                       
Query: 181 aaactggcttgggggccaaactccccaaaatctggatggttggattaaagaaacaaattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 aaactggcttgggggccaaactccccaaaatctggatggttggattaaagaaacaaattg 706

                                                                       
Query: 241 gaagctaatgaacagctgttcatcaaagccgaatcttcagagaaggccatcttctgctac 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gaagctaaggaacagctgttcatcaaagccgaatcttcagagaaggccatcttctgctac 646

                                                                       
Query: 301 agaacttagggtcctatataaacacattggctctagtagcctaaactcaaccctaccaac 360
           |||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct: 645 agaacttagggtcctatataaacacactggctctagtagcctaaatttaaccctaccaac 586

                                                                       
Query: 361 agaagtttaagaggttgcttttagatgaggaaaaaaaagtctgtgaaatctccatattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agaagtttaagaggttgcttttagatgaggaaaaaaaagtctgtgaaatctccatattta 526

                                                                       
Query: 421 attatgcctttgccagttccaagagagtaattacagcagcaattacagaatctaatgacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 attatgcctttgccagttccaagagagtaattacagcagcaattacagaatctaatgacc 466

                                                                       
Query: 481 agctttattggctctgaaagccaaagcaaaagcaactgcaaccatgttgaaataaacatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agctttattggctctgaaagccaaagcaaaagcaactgcaaccatgttgaaataaacatt 406

                                                                       
Query: 541 ggtctccagacagttgcttcattagaccctcctaacagctattcaaaagacagcatgcaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggtctccagacagttgcttcattagaccctcctaacagctattcaaaagacagcatgcaa 346

                                                           
Query: 601 gagataccctaagaagcagagcgactcagggagaaactttcacccagg 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gagataccctaagaagcagagcgactcagggagaaactttcacccagg 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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