BAC Information

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BAC

Clone NameMSMg01-316P23
Chromosome2 (Build37)
Map Location 126,943,664 - 126,944,190
singlet/doubletsinglet
Overlap geneNcaph
Upstream geneDtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra
Downstream gene1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316P23.T7 (MSMg01no316_p23.b1)MSMg01-316P23.TJ (MSMg01no316_p23.g1)
ACCAG437189AG437190
length735741
length of high quality
(start - end)
561 (43 - 603)533 (74 - 606)
definitionCHROMAT_FILE: MSMg01no316_p23.b1 PHD_FILE: MSMg01no316_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:54 2005CHROMAT_FILE: MSMg01no316_p23.g1 PHD_FILE: MSMg01no316_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAA
TTCCCTCTTACTTTCCAGGACTTGAGTCCGGTTAGGAAGCTGTTGGTTCC
CCCTACACCTTTCAGGATATCTTCCCATGCTGTGGTTGGTAGGCTTCACA
ACTGATTAGAACTATTGATGCCTTTTTTCCTCCCGGCTGCTTGCATAGCT
CCTTCTGATACCATGAGAGCTAGGCCCCGGGGGAAGTGGCTTCTAGATCA
GATGCAGCTCAATTCCAAGTCCTGTGGCTGAAGTGTGTGGTGTCTTCAAC
TACAGGGCCTTACTTTCTTTCGCTCTCTAGAAGGCACCAAGCGTTGGCAT
TTCATCTAGGCTCAGCCCCACAGTTTCCTGGCAACAGCCAGGTATGCCTG
ACTCACTGTAAAAGCGGCCGCCGCACCCTCCCCCTTCTCTTGCTCTTCTC
TTGCTCTCTTCCACTGTTACCCCTCTGTCCCCTCTCCTGAATCCCCCTCC
CCCTCTCTCCACGCGTTCATGGTCAGCCTCTACTACTCTCTTTCCCTCCC
CCACCCTTCTCCCACCCCCACCTGGACTGTTTCTGTCTCTACTACCCCTT
CAACTCCTCTCCCCATCCCCTATATAACCTCTATTTTATACTGTACCATT
GTGTGGCTATTTCAGGTTGAAGGTATGCTTCAGCATGTTTCCTCAGAGGC
AGCCCACATCATATACTCCTCATACCACGTCTCCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCTCCCAATTCCAGTTCCAGGGAATCCATGCCCTCTT
CTGGCCTGGAGAGTACCAGGCACGTATGTAATTCATGTAGGCAAAACATC
CATACATATTTAAAAAAAAAAATGAAAAAGAAAGAAGTGCTCTTTTGTGG
TAGAAGAGGTGGCTAGCATTTCCGGTTTCATCAGTTTCTTACATGTAACT
ATATGGTTTATATTCCATGCCGTGTACATGAACATGATTTCATATGTGTT
ACAGGGAAGAAGTTATTTCCCTCGAGGACAGAGACATCCAAGTCATGTGC
TCCTTTTTATCCATGAAACCTGGGGAATATTCCTATTTCAGTCCCCGGAC
CATGAAGATGTGGGCTGGCCCACATCACTGGCGCTTCAGGCCTCGACCCA
AGCGTAAGTCCTGTGGGTGGGACTTGTAGACAGGGCAGTGCAGCGGCACA
TGCTGCCTGCGGTCTGCAGTAAGCAGACAAGAGATGCTGCTGATCTCTGT
CCTTTGCATCTCCTGAGGAGAAGCTGAAGCCGGAGAGCTGAGCCAGCCTC
TGGTTGCGGTCAGTGTCAACCTCGGGAGAGTCAGCAGGAGGGGCAAGAGG
GAGATTTAGTCGGGAGAACAAGGCTCATGGCCTTACCCTGCTTCCACGGA
CCAGTACGACTTAAACTGTAGGAGCCTCTCTTTAATTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_p23.g1 MSMg01no316_p23.g1 CHROMAT_FILE:
MSMg01no316_p23.g1 PHD_FILE: MSMg01no316_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:54 2005
         (533 letters)



>mm_chr2_126943361_126944293
          Length = 933

 Score =  980 bits (507), Expect = 0.0
 Identities = 523/529 (98%), Gaps = 2/529 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagttccagggaatccatgccctcttctggcctggagagtaccaggcacgtatgtaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ccagttccagggaatccatgccctcttctggcctggagagtaccaggcacgtatgtaatt 771

                                                                       
Query: 61  catgtaggcaaaacatccatacatatttaaaaaaaaaaatgaaaaagaaagaagtgctct 120
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 770 catgtaggcaaaacatccatacatatt--aaaaaaaaaatgaaaaagaaagaagtgctct 713

                                                                       
Query: 121 tttgtggtagaagaggtggctagcatttccggtttcatcagtttcttacatgtaactata 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 712 tttgtggtagaagaggtggctagcatttccggtttcatcagtttcttacatgtaactaca 653

                                                                       
Query: 181 tggtttatattccatgccgtgtacatgaacatgatttcatatgtgttacagggaagaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tggtttatattccatgccgtgtacatgaacatgatttcatatgtgttacagggaagaagt 593

                                                                       
Query: 241 tatttccctcgaggacagagacatccaagtcatgtgctcctttttatccatgaaacctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tatttccctcgaggacagagacatccaagtcatgtgctcctttttatccatgaaacctgg 533

                                                                       
Query: 301 ggaatattcctatttcagtccccggaccatgaagatgtgggctggcccacatcactggcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 532 ggaatattcctatttcagtccccggaccatgaagatgtgggctggcccagatcactggcg 473

                                                                       
Query: 361 cttcaggcctcgacccaagcgtaagtcctgtgggtgggacttgtagacagggcagtgcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cttcaggcctcgacccaagcgtaagtcctgtgggtgggacttgtagacagggcagtgcag 413

                                                                       
Query: 421 cggcacatgctgcctgcggtctgcagtaagcagacaagagatgctgctgatctctgtcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cggcacatgctgcctgcggtctgcagtaagcagacaagagatgctgctgatctctgtcct 353

                                                            
Query: 481 ttgcatctcctgaggagaagctgaagccggagagctgagccagcctctg 529
           ||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 352 ttgcatctcctgaggaggagctaaagccggagagctgagccagcctctg 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)