BAC Information

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BAC

Clone NameMSMg01-317F04
Chromosome2 (Build37)
Map Location 34,847,758 - 34,848,073
singlet/doubletsinglet
Overlap geneHc
Upstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1
Downstream geneAI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317F04.T7 (MSMg01no317_f04.b1)MSMg01-317F04.TJ (MSMg01no317_f04.g1)
ACCAG437426AG437427
length752780
length of high quality
(start - end)
317 (45 - 361)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no317_f04.b1 PHD_FILE: MSMg01no317_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:19 2005CHROMAT_FILE: MSMg01no317_f04.g1 PHD_FILE: MSMg01no317_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCGATTTTACCCACTTTGCCTCTTCTCAACTTCAAACTAGCCAAATT
GTCTTTGAAGCGTTTTGTGTTCTTTTCGTGGGGGACCCATGCCTGGGCAC
TTAGAAAAAAAGACAAGAGTAAAGGAGAAAAGAAATATAACCAATCACAA
TCTAACAGACACAGGAAGGAACTGCTGATGTGTTAGTGTGTTTTCTTCCA
ATCTATTCTTGGGGTTAGGGCTAGCTTTAGGGCTGGGATTGGGCTAGCAT
TAGGGTTTCAGGTCTCTTTCTAATATACAACTAATATTTTACCTTGGAAG
TAGTCTGTTATTTTTTTTGACCACCCCCCCCCCAACCTAGATCCATTCAC
TGCTCTGCATGAGTCAGCTGCATAACCCTGACTGAGTGCCGGACTCTGGC
TCCAGGTTCTTCATCTGTTGTTGTGGAGTGGATGGTTTCTGTGTCCAGAA
GGGCAGGGCGCTGGGATTGTTCCTCAAGGGAAGCATGAGGATAAATATCT
CCAAGATCTTCTGTGCTCTAAAGCTCTTAGGGTCTGACCCATATACCTTA
ATACCTAGAAACCACTATAAATTTTGCAAACCTGCTAACAGGGGTTACCG
GCGAATTGTCTTTAACCCCCGCCTTCAAGGTAACGCTTAGGTCGGTTATC
CCTTCTTCGATTTCGACGCCTAGGTCTGGTTCCACCTATGTTATGTCAGC
TC
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGGAAAATAAATATCAGGG
AAGTGTCTTCCTAGTTTTAACCACCAACACATAGAAAAGCCACCACAGCT
CTGGGTGGGACCAGGGGGAGAACTTGCAGTGCTGTCTACATGGTGTTGGC
TTTGCAGGGATGCAAAATACAAGAATTATGGGATCACTAGAGACTCACCC
CCCCCCCAATAATGCTAAAACCAAGCGTTGTGGGGGAAGGGTCTGATTTT
CCTGCTATGAGATTCTGAGAAGCCAACCCCTGTTCCTATTTCACAGATAT
GAAATTCCCATGTTATATGTTAGACACCCCCCCCCCCTCTAACCATGTAC
AAACAAGACTCCTGGATGTTGCCCCCCGCACTGACATTAGCCTGCTGACA
GGCAAAGCCAAAAGGATGATGTTCTGGAGAAGGCAGTACTCAAAGTGCCT
GCTACAGTAAGTGGGGGCCATCATTAAATACTTTGTATAAAAACAAGCAC
TAAGGCCCATTGCACTTGCCAAACCTTATATGCCCCCAGTACAGGGCGAA
CCGCCAGGGCCCAAAAAGGGCGCAGTGGGTTGGCCTAGGCGAAGCCACTT
CTTCCCTTCCTCTTCCCTTACACTATTCTCCCCCCCCTCCCCTCCCCCCA
TTCCTCTACTTTTCCCTTTCTATTTTCTCTTTCTTTCATCCTCTCTTCGC
CCCCCCTTTTCATCCCTATATCCTCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_f04.b1 MSMg01no317_f04.b1 CHROMAT_FILE:
MSMg01no317_f04.b1 PHD_FILE: MSMg01no317_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:19 2005
         (317 letters)



>mm_chr2_34847656_34848376
          Length = 721

 Score =  543 bits (281), Expect = e-159
 Identities = 306/317 (96%), Gaps = 6/317 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccgattttacccactttgcctcttctcaacttcaaactagccaaattgtctttga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 418 gaattccgattttacccactttgcctcttctcaacttcaaactagccaaatggtctttga 359

                                                                       
Query: 65  agcg-----ttttgtgttcttttcgtgggggacccatgcctgggcacttagaaaaaaaga 119
           ||||     |||| | || |||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 358 agcgttatttttttttttttttttgtgggggacccatgcctgggcacttag-aaaaaaga 300

                                                                       
Query: 120 caagagtaaaggagaaaagaaatataaccaatcacaatctaacagacacaggaaggaact 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 caagagtaaaggagaaaagaaatataaccaatcacaatctaacagacacaggaaggaact 240

                                                                       
Query: 180 gctgatgtgttagtgtgttttcttccaatctattcttggggttagggctagctttagggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gctgatgtgttagtgtgttttcttccaatctattcttggggttagggctagctttagggc 180

                                                                       
Query: 240 tgggattgggctagcattagggtttcaggtctctttctaatatacaactaatattttacc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tgggattgggctagcattagggtttcaggtctctttctaatatacaactaatattttacc 120

                            
Query: 300 ttggaagtagtctgtta 316
           |||||||||||||||||
Sbjct: 119 ttggaagtagtctgtta 103


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 721
Length adjustment: 9
Effective length of query: 308
Effective length of database: 712
Effective search space:   219296
Effective search space used:   219296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)